Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5539g00015 ATGGCATCAGGCGGAACCGAGGCCTTTCCAGATTTGGGTAAACACTGCCAACACAGCGATTGCCACCAACTCGATTTTCTTCCTTTCACATGCCAAGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCCTTCAAGTCTCACGCGTGCAAGAATTCCGACCACAACAGCAGAAAAGTGGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACCGGCTATGTGGGACAGGAAGAGGAGGCAATCTTGGAGAAGCACCTAAAGTCTGGGAACTGTGATCCCACCAAGAAGAAGAAACCCGTTTGCCCTGTCAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGTACCTGTAAAACTTGCCACATTAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGCAGCCAAGGAGTTTCAGCTTCTTCCTCATCCTCTGTTGCTGAAAGTGGATGGAAGAATCGGTTTTTGGCTGCTTTAGGTTTAAGGGCTGGACAGAACTGTGCCAAAACTGGTTCATCTCGTTCTACCTCTCCTCCTAGCACTCCTTCTGTCAAGGCCTATTGA 579 0.4922 MASGGTEAFPDLGKHCQHSDCHQLDFLPFTCQGCQKVFCLEHRSFKSHACKNSDHNSRKVVVCETCSMSIETTGYVGQEEEAILEKHLKSGNCDPTKKKKPVCPVKRCKEVLTFSNTSTCKTCHIKVCLKHRFPADHACSQGVSASSSSSVAESGWKNRFLAALGLRAGQNCAKTGSSRSTSPPSTPSVKAY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5539g00015 192 Gene3D - 79 158 IPR035896 -
Vium5539g00015 192 MobiDBLite consensus disorder prediction 172 192 - -
Vium5539g00015 192 SUPERFAMILY AN1-like Zinc finger 9 58 IPR035896 -
Vium5539g00015 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Vium5539g00015 192 Gene3D - 2 69 IPR035896 -
Vium5539g00015 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 185 - -
Vium5539g00015 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Vium5539g00015 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Vium5539g00015 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Vium5539g00015 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Vium5539g00015 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Vium5539g00015 192 SUPERFAMILY AN1-like Zinc finger 95 144 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5539g00015 Vium-Chr5539 142085 143595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5539g00015 1 172 C2H2 Transcription Factor Family AT3G28210 61.628 4.01e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5539g00015 - - gmx:100500384 330.487