Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5539g00014 ATGGAGATTCAACAATCGCTGAAGCTCACCATCCACAAGAAATGGCCATCGTCACCAAAGAAAACATCAAAAGATTCAGAACCGATAAACACCACTGCAACTCCCAGGCTCAAATGGAAGAAAATCTTCTTTCACACTAAAACCAAACCCAAAATCCAAACCCCCCCAGATGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTCAACTTTACACCACAACTCCCCGACGGCACTACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTCCCCCACAACAACCTCGTGCAGCAAACCTCAATCTCCCCTGACACGAAACTAGTACAACACACCTCGATTTCCCCAGACACCCCCAACTCAAACCTCGTACAAACCTCGATCTCCCCGAACGTCGGTACCGTAGAAGAAAAGCTCTCCGACAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCCTCGAACAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACGCATCTGTACACGAGCTCCGAGGAATCCATAGCCACATCGTCGGCCTCAACGCCGCCGTTTCAACTCGCCACGCGCCCCAGTTGTTGCTACTATTCTTCCCCTTCCTCGTCAGAAATCGAACCCGCCGCAACCCCAGAAGAAGAAGAAATCACGGGGAAGCTCAAAAGCCCACTACAGAACATAGTCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAGTGAGAGAAGAAACCCGGGTTCAACTCTGCACTCCGCGGATACTCTCTGCGTTACGCTCCCTCGTGCTGTCGAAACACGTGAACGTCCAGGTGAACGCTTTGGCTTCATTGGTGAACCTTTCTCTGGAGAAGAGTAACAAAGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACTGTGCTGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTCTGGGTGGTTTGGGTCCGCTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGGCACGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTAAGTATGGTTAAATTGGGTCACATGACGGGCCGGGTTTTATTGATTTTGGGAAACTTGGGTTCCGGGTCGGACGGACGGGCCGCGATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTCGGGTTGTTGAATGTACCCGACTCGGCTGCCGGGTCGACTCGGGAGAGTTGTGTAACGGTAATGTACGCCTTGAGTCACGGGGGTTTGAGATTTAAGGCGGTTGCAAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCATAAGGTGAGAAAGATTTTGGAGATGATGAGGGCCAAGGAGGTGGAGGAGGAAGATGTGGACTGGGAAGAGTTGCTTGACTCGGGGCTGGGTTGTCGGACTCGGGGCCGACTCGGGGGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1725 0.5449 MEIQQSLKLTIHKKWPSSPKKTSKDSEPINTTATPRLKWKKIFFHTKTKPKIQTPPDEFLCPVSRSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTKLVQHTSISPDTPNSNLVQTSISPNVGTVEEKLSDRDPILDSLDENPPSNNLRRHAETEVPIRPTHLYTSSEESIATSSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEITGKLKSPLQNIVEEALLSLRKLTRVREETRVQLCTPRILSALRSLVLSKHVNVQVNALASLVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLNVPDSAAGSTRESCVTVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESSANSAEF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5539g00014 574 Gene3D - 258 438 IPR011989 -
Vium5539g00014 574 PANTHER U BOX DOMAIN-CONTAINING 47 533 - -
Vium5539g00014 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Vium5539g00014 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 137 IPR013083 -
Vium5539g00014 574 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Vium5539g00014 574 SUPERFAMILY ARM repeat 263 531 IPR016024 -
Vium5539g00014 574 FunFam RING-type E3 ubiquitin transferase 13 130 - -
Vium5539g00014 574 Pfam Armadillo/beta-catenin-like repeat 331 367 IPR000225 GO:0005515
Vium5539g00014 574 MobiDBLite consensus disorder prediction 1 31 - -
Vium5539g00014 574 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Vium5539g00014 574 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Vium5539g00014 574 MobiDBLite consensus disorder prediction 172 198 - -
Vium5539g00014 574 FunFam RING-type E3 ubiquitin transferase 256 532 - -
Vium5539g00014 574 SMART arm_5 328 368 IPR000225 GO:0005515
Vium5539g00014 574 SMART arm_5 287 327 IPR000225 GO:0005515
Vium5539g00014 574 SMART arm_5 369 409 IPR000225 GO:0005515
Vium5539g00014 574 SMART arm_5 449 492 IPR000225 GO:0005515
Vium5539g00014 574 MobiDBLite consensus disorder prediction 176 198 - -
Vium5539g00014 574 Gene3D - 439 541 IPR011989 -
Vium5539g00014 574 SUPERFAMILY RING/U-box 52 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5539g00014 Vium-Chr5539 124813 130693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5539g00014 56 574 U-box Gene Family AT5G40140 55.682 1.30e-173 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5539g00014 - - gmx:100798675 841.647