Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5534g00003 ATGGGAACTAAGTCAGTTGTGGATTTAATGGGGTCTTCATCTGAGGTTCACTTTTCTGGAGTTTACATGGATGGCATAGAGCAAAGAAACACAGAGCAACCGACTACTTCTGCAACTGACATGAACAAACAACCTTTTGTGATAGGTGTTGCTGGTGGAGCAGCATCCGGTAAGACATCAGTTTGTGATTTGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGCAACTTATAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCATTTGCTACGTGTCATGGACAAGTTGAAGCGTGGCCAGGCAGTAGATATTCCGAAGTATGATTTTAAGGGTTACAAAACTGGTGTTTTTCCAGCGAGACGGGTAAACCTGGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTGCGGGCATTGATGAATATGAAGATATTTGTCGACACAGATGCTGATATTCGCTTGGCGAGAAGAATTAAACGGGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTCGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTTCCCACCAAGAAGTATGCCGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCTATTGATTTGATTGTACAGCATATCCGCATGAAGCTTGGGCAGCATGACTTGTGTAAAATATACCCTAGCTTATATGTTATTCAGTCTACTTTTCAGATACGGGGTATGCATACCCTGATTCGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACGGAAAAGCAAGTAATCACTCCAACTGGATCGGTTTACAGTGGCGTGGATTTCTGTAAGAGGTTGTGTGGTGTCTCCATCATCCGGAGTGGCGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGCATCAAAATTGGGAAAATTCTTATTCACAGAGAGGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCAAAGGATATCTCAGATAGACATGTATTGCTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTCTACTTTTAAAGAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTGATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTCCCAAAAATAAAGATCGTGACATCGGATATTGAAATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGAGAGTTTGGGGATCGGTATTTTGGAACAGATGATGACCACCAGGTGCTGCTCCCTTCACAGTAG 1428 0.4153 MGTKSVVDLMGSSSEVHFSGVYMDGIEQRNTEQPTTSATDMNKQPFVIGVAGGAASGKTSVCDLIIQQLHDQRVVLVNQDSFYHNLTEEQLIRVQDYNFDHPEAFDTEHLLRVMDKLKRGQAVDIPKYDFKGYKTGVFPARRVNLADVIILEGILVFHDPRVRALMNMKIFVDTDADIRLARRIKRDTADNARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRMKLGQHDLCKIYPSLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPILGTGNSAVQAISLLLKKGVPESNIIFLNLISAPQGVHVVCKSFPKIKIVTSDIEIGLNEDFRVIPGMGEFGDRYFGTDDDHQVLLPSQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5534g00003 475 PANTHER URIDINE KINASE 38 375 - -
Vium5534g00003 475 FunFam Uridine kinase 42 248 - -
Vium5534g00003 475 Gene3D - 249 464 IPR029057 -
Vium5534g00003 475 PRINTS Uridine kinase signature 45 62 - -
Vium5534g00003 475 PRINTS Uridine kinase signature 75 86 - -
Vium5534g00003 475 PRINTS Uridine kinase signature 177 187 - -
Vium5534g00003 475 PRINTS Uridine kinase signature 120 135 - -
Vium5534g00003 475 PRINTS Uridine kinase signature 213 226 - -
Vium5534g00003 475 PRINTS Uridine kinase signature 191 202 - -
Vium5534g00003 475 Pfam Phosphoribulokinase / Uridine kinase family 47 233 IPR006083 GO:0005524|GO:0016301
Vium5534g00003 475 NCBIfam uridine kinase 43 245 IPR000764 -
Vium5534g00003 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 238 IPR027417 -
Vium5534g00003 475 Gene3D - 41 248 IPR027417 -
Vium5534g00003 475 FunFam Uridine kinase 249 464 - -
Vium5534g00003 475 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Vium5534g00003 475 CDD UMPK 47 243 IPR000764 -
Vium5534g00003 475 Pfam Uracil phosphoribosyltransferase 263 464 - -
Vium5534g00003 475 CDD PRTases_typeI 322 440 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5534g00003 Vium-Chr5534 7027 14964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5534g00003 1 467 PRT Gene Family AT4G26510 83.015 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5534g00003 K00876 - gmx:100798205 876.7