Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5526g00004 ATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCCGCGCACACCTTCCTGTTGTGCTTCACTCTCTTCCTCGTTCTCAAACTTGATCACGATCTCTCTTGTTCTTGGTGGGTAGTATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTCGTTGCAACGCCGTTGCTTATTGCATTCGAATTGCTCCTTTGTATATATCTTGAGAGCATATATGATCTTGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGACGAAGAAAACTTGAGTGACGAGGCAATATGGGAAACTCTTCCGCACTTTTGGGTTGCTATTTCTATGGTGTTCTTCATTGCTGCAACAGTCTTCACACTCCTAAAAATGAGCGGTGATGTAGGTGCTCTCGGTTGGTGGGACCTGTTTATTAACTTTGCTATCGCCGAATGCTTTTCTTTCCTTGTATGTACAAAGTGGTCCAATCCTGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACTATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACGGATGAAAATCGATCCGAGGGGAGAATCTGTAGCCTTCAAGAGATAGGGGGGCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTCTGCTGTATATATACCACTTCCAGTTATTTTCTCTCCGCTTTTCCTACTTCAAGGAGCTGGAGTAATGTTATCTGCATCTAAATTAGTGGAGAAACTTGTGCTTCTCCTTCGAAGTGGAGCTGCTGCAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTGTTGGGTTGGTGGTCAATTGACGAAGGGAGTCGGGAAGAACAAGCACGAATATACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCAAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACTGAAATCACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGCAGGCATCGCGTTCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCTATTGCCGAGCGTCTGCCTGTTTATGATGTTTAG 1401 0.4354 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHDLSCSWWVVFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESIYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENLSDEAIWETLPHFWVAISMVFFIAATVFTLLKMSGDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTDENRSEGRICSLQEIGGHFMKVPIIVFQVLLCMHLEGTPASAVYIPLPVIFSPLFLLQGAGVMLSASKLVEKLVLLLRSGAAAGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARIYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5526g00004 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Vium5526g00004 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Vium5526g00004 466 SMART ring_2 419 453 IPR001841 -
Vium5526g00004 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Vium5526g00004 466 FunFam Kinesin-like protein KIN-7D, mitochondrial 396 464 - -
Vium5526g00004 466 SUPERFAMILY RING/U-box 410 461 - -
Vium5526g00004 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Vium5526g00004 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5526g00004 Vium-Chr5526 15105 22980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5526g00004 1 466 C3H Transcription Factor Family AT1G73950 72.318 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5526g00004 - - gmx:100791390 892.878