Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5524g00027 ATGCCCGACTTCAACGACTCCATCGCGCCGCCGTCGCGCCCCGTCCCTGTTCGCGAGGACTGCTGGTCCGAGGAGGCCTCTTCCACGCTTGTTGACGCCTGGGGCCGACGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGATTGGCAGGATGTCGCCGATGCTGTCAACGCGCTCCACGGACACACCAAGAAGACGCACCGCACAGACGTCCAGTGCAAGAACCGCATCGATACCATAAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCGTCCTCCAATGGTACTCTCTCTTCCTCCTGGCCTTTCTACGAACGATTGGATGCTCTTATTGGCCCTAATTTCAACGCCAAGAAACCTCCTTCCTCCTCGCCGTCTCCTTCGCCGCCTGTGGCTCTTCCGCTGCTTCCGCATCGGAAGAACCCTTCCTCCTCACCTGCGATTGCGGTGACACCGACGGCCGTCGCGCTGCCTCAGAAGCGTTCCGCCGCTGCGGCGGCGATGGACGAGGGTTATTTCAGAAGAAATTACTCCGCTGTTGCCGCGGCTGCGGCGGCTGCGGAGGCTGACGAAGACGAGGAGGAAGAGGAAGAGGAGGAGGCGGACGATGTGGAGGAGGAGGAGGACGAAGATGAAGGGAGGGGGAGCGAGGTGGAGGAAGGGGAGAAGGAGAGTGAAGGGATGAGGAGATTGGCGAAGGCGATAGAGAGGTTTGGTGAAGTGTATGAGAGAGTGGAGGGTCAGAAGCTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAAGATCTTGAAGTCCAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTCGAGAGAATTAAGCGGGGTAAACGATCTGGCTCTAACGATATGTATAGCTAG 906 0.5751 MPDFNDSIAPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDALIGPNFNAKKPPSSSPSPSPPVALPLLPHRKNPSSSPAIAVTPTAVALPQKRSAAAAAMDEGYFRRNYSAVAAAAAAAEADEDEEEEEEEEADDVEEEEDEDEGRGSEVEEGEKESEGMRRLAKAIERFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5524g00027 301 MobiDBLite consensus disorder prediction 190 220 - -
Vium5524g00027 301 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Vium5524g00027 301 Coils Coil 183 217 - -
Vium5524g00027 301 Gene3D - 22 88 - -
Vium5524g00027 301 MobiDBLite consensus disorder prediction 118 150 - -
Vium5524g00027 301 MobiDBLite consensus disorder prediction 187 233 - -
Vium5524g00027 301 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 292 IPR044823 -
Vium5524g00027 301 FunFam trihelix transcription factor ASIL2 22 88 - -
Vium5524g00027 301 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5524g00027 Vium-Chr5524 172800 178161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5524g00027 222 300 Trihelix Transcription Factor Family AT3G14180 45.783 3.13e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium5524g00027 Myb_DNA-bind_4 5.7e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5524g00027 - - gmx:100815241 451.44