Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5524g00017 ATGGGACAGCACTGTTTTCTGCATGTGCTCTGTGCTTCCCCTTTATTTTTAAGTTCGCGGAGCTCTTCTAATACTCTTGTTTACTTTTCTCTCTCTGTCTCAAAGTCAGAAACAGAAACTAAGTTGTACAAGAACCAAACCCCAAACGCGCACTTTTTTCAAACTTCACCATCTTGCTTTGTTTTCTCCTTCCTCTTAAACATGTCAACTCCTTCATCATCTTCTTCTATTTGGGTGTTGTCAAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGCTTTCTCCAATCCAAAGCAACCAGAAAGCGTTTTGATCCCTCCGATCGGTTTGACGTGGCTAAGGGCAGTGGTGAACACAAGAAGGCTGAAAATATTGAAACAGTACAGGTTATGCAGAAGACTGAAGAGGAGGAGGAAGAAGTTTTTGCGATCATGTTCCGGAGAACTGTCAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAAGTGGCGGCAAAAGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTCAGAAAGTTGATTACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGCGGCGTCGCCAGTGGCTAGCCGCAGGCGAGCCGGGTTGACGGCGTTGGTCCACCTGGCTGATGGAACTTACACGAACAAGGCTTTGATAGTTGAGGCAGGAATATTGTCCAAGCTGCCAAATACAATTGACCTTGTAGATGAATCAACAACATGTAAATTGGCAGAGTTGCTTTTGTCACTGTCATCACTAGTAAACACTCAGTTCCCTCTTGCTTCATTAGACTTTATCCCATTACTTAGGCACATTTTTGAGACAGACACATGTTTTGACACGAAACAATCGTGTTTGAGTGCTTTGTATAACCTATCAACTGTATTAGAAAATGCATCCGCTATGGTTTCAAGTGGGTTGGTCCCTATCCTCTTGGAAGCGTCATCGTTAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGGAAGAAAGCAATAGAGAACAGCACAATGGTCCCAGAAACCTTCATTGATATTTTGTCATGGGAAGATAAGCCTAAATGCCAAGAGTTATCGGTGTATATTTTAATGATTCTAGCACATCAAAGTTCGTTGCAAAGAAAGAAGATGGCACAGGCAGGGATTGTTCCTGTGCTTCTTGAAGTGGTTTTATTGGGCAGCCCTTTGGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAGACTAAGATGGGGCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGATCACCTTTAAATCAAAGAGAAGCAAAAGAAGGGAAGAAAATGATGAAGAGTTTGGTGAAACAGAGTCTGCACAGGAATATGCAAATAATAACTCACAGGGCAAATGCTGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATCATCAGCACAAGTTCCAAGAGTTTGCCTTACTAA 1503 0.4271 MGQHCFLHVLCASPLFLSSRSSSNTLVYFSLSVSKSETETKLYKNQTPNAHFFQTSPSCFVFSFLLNMSTPSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRFDPSDRFDVAKGSGEHKKAENIETVQVMQKTEEEEEEVFAIMFRRTVKMLHFGSWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMAASPVASRRRAGLTALVHLADGTYTNKALIVEAGILSKLPNTIDLVDESTTCKLAELLLSLSSLVNTQFPLASLDFIPLLRHIFETDTCFDTKQSCLSALYNLSTVLENASAMVSSGLVPILLEASSLKEISEKALATLGNLSVTLMGKKAIENSTMVPETFIDILSWEDKPKCQELSVYILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSPLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFAMGSPLNQREAKEGKKMMKSLVKQSLHRNMQIITHRANAAGESSKLKSLIISTSSKSLPY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5524g00017 500 MobiDBLite consensus disorder prediction 427 453 - -
Vium5524g00017 500 SUPERFAMILY ARM repeat 151 420 IPR016024 -
Vium5524g00017 500 Gene3D - 120 444 IPR011989 -
Vium5524g00017 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 76 500 - -
Vium5524g00017 500 SMART arm_5 175 215 IPR000225 GO:0005515
Vium5524g00017 500 SMART arm_5 258 299 IPR000225 GO:0005515
Vium5524g00017 500 SMART arm_5 300 338 IPR000225 GO:0005515
Vium5524g00017 500 SMART arm_5 217 257 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5524g00017 Vium-Chr5524 91965 95037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5524g00017 159 446 U-box Gene Family AT1G67530 28.571 3.61e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5524g00017 - - gmx:100813828 694.501