Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5517g00003 ATGGTGGTGAAGGTGTACGGTCCAATTTATGGATGCCCCAAAAGGGTGGTTGTGTGTCTGATTGAGAAGGAAATCGAGTTTGAAGCAGTGCATGTCGATCTCTTCAAGGGAGAGAATAAGGAACCCGAGTTCCTTAAGTTGCAGCCATTTGGATCACTTCCTGTTATTCAAGATGGTGATTATACTCTCTATGAATCTCGTGCAATAATTAGATACTTTGCAGAGAAGTATAAAGACCAAGGAACTGACTTGTTGGGAAAGACAATAGAAGAAAAGGGTCTTGTGGAACAATGGCTTGAAGTGGAAGCTCATAACTTTCATCCGCCACTCTACGACTTGGTTATCAATCTTCTGTTTGCCCCATTAATGGGTGATCCCTCGGACCAAAAGGTGATAGAAGAGAGTGATAAAAAGCTTGAGAAGGTGCTTGATGTTTATGAGGAGAGGCTCTCGAAAAGCAAGTACTTGGCTGGTGAGTTCTTCAGCCTTGCTGATCTTAGCCATCTCCCATTTGGTCATTATTTAGTGAACCAAACTGGAAGAGGGAATTTGATGAGAGAGAGGAAGCATGTGAGTGCTTGGTGGGATGATATCAGCAACAGACCATCTTGGAAGAAGGTTCTTCAGTTATACAAATACGCTGTCTAG 648 0.429 MVVKVYGPIYGCPKRVVVCLIEKEIEFEAVHVDLFKGENKEPEFLKLQPFGSLPVIQDGDYTLYESRAIIRYFAEKYKDQGTDLLGKTIEEKGLVEQWLEVEAHNFHPPLYDLVINLLFAPLMGDPSDQKVIEESDKKLEKVLDVYEERLSKSKYLAGEFFSLADLSHLPFGHYLVNQTGRGNLMRERKHVSAWWDDISNRPSWKKVLQLYKYAV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5517g00003 215 SUPERFAMILY Thioredoxin-like 3 81 IPR036249 -
Vium5517g00003 215 CDD GST_N_Phi 2 76 - -
Vium5517g00003 215 Pfam Glutathione S-transferase, C-terminal domain 111 202 IPR004046 -
Vium5517g00003 215 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 209 - -
Vium5517g00003 215 FunFam Glutathione S-transferase F2 86 208 - -
Vium5517g00003 215 FunFam Glutathione S-transferase F2 2 85 - -
Vium5517g00003 215 SUPERFAMILY GST C-terminal domain-like 81 209 IPR036282 -
Vium5517g00003 215 SFLD Glutathione Transferase (cytosolic) 8 201 IPR040079 -
Vium5517g00003 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 215 IPR010987 -
Vium5517g00003 215 CDD GST_C_Phi 90 208 IPR034347 -
Vium5517g00003 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 81 IPR004045 -
Vium5517g00003 215 Gene3D - 86 208 - -
Vium5517g00003 215 SFLD Main (cytGST) 8 201 - -
Vium5517g00003 215 Gene3D Glutaredoxin 1 85 - -
Vium5517g00003 215 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5517g00003 Vium-Chr5517 11094 14993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5517g00003 1 215 Glutathione S-transferase Gene Family AT2G30870 60.465 3.50e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5517g00003 K00799 - gmx:100499911 416.772