Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00055 ATGGAAGTTGAAAAAAGGTTTGTTTTGGTTGGTATTAGAATTGATGGCCATAGTAGACAGCTTCTCGACTGGGCACTTGTCAAGGTTGCTGAACCAGGGGATTCTGTTGTAGCAGTGCATGTTGTTAAAAATCCAGATCACGTTTGGAAAAGCAATACTCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTGATGCTAAGAAGTTAGATCTCACTGGTCAAATCTTCTGTGGATGCTCCGTCCGAAACATTCTTGTTAGAGAAGCAAAAAAACATGATGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGGCTTAGCTAAATATTGCGCCAAACGAGTACCAGCCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTATATAGGAGTTGCACCAACGAACAACAACCAGGTACTCTTATAAAGGACCCAAGGCCAAGCTTAAGAACCATAGGAAAAAACTCAAGTGACAGAGTAAACCAGTCTACATTTGGTGACTCCACCCTGGAGATTGAGAAACCAGCAACCAAAAATTCCTTAGATTTGAAGGAAGAAGCATTTAAAGGATTAGCAAAATGTAAGACAAGGTCAATATCCATGTTTGCAGGTGATTCAGCTAAGCAAAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAATTCGGGAACCTCACAAACCCATCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACGTTACCGGATCGTTCACCATCTAAAAGTCCCTGCTCTTCTTCTTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAGATGCAACGCGTAAATTCAATCGACTGCAAGTGGTTCAGCCTTGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATTGTGTGTACAAGGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTATTGCAGTCATCCAAAGAAGCCTGGAACGAGTTTGCCCTTGAGATGGAAATAACATCCTCATTGAGGCACAAAAACATTGCCCCTCTACTTGGGATTTGTACAGAGGACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCACCTTAGAGGAAAATCTGCATGGAAAGAGCAAATTGTCATGGGAGGTGAGATTTAATGTGGCAGTTGGGATCGCTGAAGCCCTGGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCAAGGGTTTGAACCTCAGTTATCTGATTTCGGACTTGCAGTATGGGGACCTACAAATTCATCCTTTTTGACACATGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAATGTCAGTGACAGGATAGATGTTTATGCATTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTATTGGACCCAGATTTAGAAGGGAAATTTGATGAGGTCCAATTGCAAAGAATGGTTATGGCAGCATCTTTATGCATCCAACGGGCTGCTCGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTGCTGAACTCCCTTGGGAACAATGAGGATGATTCAGAAAATGGAGAAAACATCGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTCAATTAG 1971 0.4282 MEVEKRFVLVGIRIDGHSRQLLDWALVKVAEPGDSVVAVHVVKNPDHVWKSNTLIDDYLEVYEGLCDAKKLDLTGQIFCGCSVRNILVREAKKHDALALVVGGRAGLAKYCAKRVPATTNVLAIQGSRIVYRSCTNEQQPGTLIKDPRPSLRTIGKNSSDRVNQSTFGDSTLEIEKPATKNSLDLKEEAFKGLAKCKTRSISMFAGDSAKQKLGWPLLRGANSGTSQTHHARDMSVVQWVMTLPDRSPSKSPCSSSSEDNPFERSISDIDDESSKFSSAPSVELPNGLEEMQRVNSIDCKWFSLELLQSCTRQFSSENLVGKGGSNCVYKGVLPDGKPVAVKVLQSSKEAWNEFALEMEITSSLRHKNIAPLLGICTEDNTLISVYDYLPQGTLEENLHGKSKLSWEVRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSQGFEPQLSDFGLAVWGPTNSSFLTHDVVGTFGYLAPEYFMYGNVSDRIDVYAFGVVLLELISGREPISSAACKGQESLVVWAKPMIDSGDIKGLLDPDLEGKFDEVQLQRMVMAASLCIQRAARLRPKLNQILKILKGDEKVEYLLNSLGNNEDDSENGENIDDEVYPSSSAELHLSLALLGVDDDKASQTSTELSYSEHLKEQWSRSSSFN 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00055 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vium5514g00055 656 Gene3D HUPs 2 115 IPR014729 -
Vium5514g00055 656 SMART serkin_6 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5514g00055 656 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 104 - -
Vium5514g00055 656 MobiDBLite consensus disorder prediction 244 262 - -
Vium5514g00055 656 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5514g00055 656 MobiDBLite consensus disorder prediction 244 282 - -
Vium5514g00055 656 PANTHER OS08G0249100 PROTEIN 188 591 IPR046958 -
Vium5514g00055 656 Pfam Protein kinase domain 316 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5514g00055 656 FunFam Putative receptor-like serine/threonine-protein kinase 389 595 - -
Vium5514g00055 656 MobiDBLite consensus disorder prediction 141 165 - -
Vium5514g00055 656 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 283 388 - -
Vium5514g00055 656 CDD USP_Like 8 109 - -
Vium5514g00055 656 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Vium5514g00055 656 SUPERFAMILY Protein kinase-like (PK-like) 295 580 IPR011009 -
Vium5514g00055 656 Gene3D Transferase(Phosphotransferase) domain 1 389 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00055 Vium-Chr5514 315093 319397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00055 302 580 Trihelix Transcription Factor Family AT1G70460 44.056 6.20e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium5514g00055 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00055 - - gmx:100789189 991.875