Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00045 ATGGGAAGATCGCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGAAGACAGACTCATATCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGGTCACTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGTCCCGACCTCAAGCGTGGCAACTTCACCGAGGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGGAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACGGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGACCTCTCAACGAAGCAGCAGCTTCTTCTGCAACAGTTGTAACAGTTGCAACTGCCAGTAATATATCTTTCGGTAAACAAGAACAAGAGACAAGTTCGAGTAATGGAAGCGTGGTTATAGGGTCCATCTTAGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCACCAACAACATCATCATCATCAACAACAACAACAACCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTGGCCAACGCCGTCGCTGCCAACAACACCGCTCCTCCTGCTTCTACCGCCGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 777 0.4968 MGRSPCCEKAHTNKGAWTKEEEDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAAASSATVVTVATASNISFGKQEQETSSSNGSVVIGSILERCPDLNLELTISPPRHQQHHHHQQQQQPQKNLCFVCSLGLHNSKDCSCNVANAVAANNTAPPASTAAYDFLGLKTNGVWDCTSLEMK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00045 258 CDD SANT 69 112 IPR001005 -
Vium5514g00045 258 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vium5514g00045 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium5514g00045 258 CDD SANT 16 61 IPR001005 -
Vium5514g00045 258 Gene3D - 14 66 - -
Vium5514g00045 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Vium5514g00045 258 Gene3D - 68 137 - -
Vium5514g00045 258 FunFam Myb transcription factor 68 137 - -
Vium5514g00045 258 SMART sant 66 114 IPR001005 -
Vium5514g00045 258 SMART sant 13 63 IPR001005 -
Vium5514g00045 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium5514g00045 258 FunFam MYB-related transcription factor 13 66 - -
Vium5514g00045 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium5514g00045 258 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium5514g00045 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium5514g00045 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00045 Vium-Chr5514 233532 234947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00045 1 258 MYB Transcription Factor Family AT4G38620 58.596 9.63e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5514g00045 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00045 K09422 - gmx:780553 435.261