Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00035 ATGCCTAAAGCGATCGCCTTTCTCGTTCACCCACGACTTCTCCTTCTCTTCCTTGTTCTCTCAATTTTCCTCATTTTCGCATATACTGGTTCTACCGCTACTTATGGTTCTACTACTTCAAAACTGGTTGTTGAGGAGAAAATAGAACAGGTCCCTGAAATTACACACAGAGTGTTCTTGGACATTGATATTGACAAACAGCGATTAGGTAGGATAGTGATTGGATTGTATGGCCAAGTAGTACCGAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGCAGAAAGGAAAGAGTGAAAATGGCTTAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGCGGAGACATTGTTCATCGTGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCTGGCGTTGTCTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACAACGGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTATTTGGCAAGGTTGTACAAGGCATGGATATTGTGTATGCAATTGAAGGGGGAGCTGGAACCTACAGTGGAAAACCCAGGAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGAGCCACTGGGATGATGAAAGTTGA 702 0.4259 MPKAIAFLVHPRLLLLFLVLSIFLIFAYTGSTATYGSTTSKLVVEEKIEQVPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGQKGKSENGLKLHYKGTPFHRIVSGFVIQGGDIVHRDGKGSESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVYAIEGGAGTYSGKPRKKVVIADSGEIPKSHWDDES 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00035 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 FunFam Peptidyl-prolyl cis-trans isomerase 44 230 - -
Vium5514g00035 233 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
Vium5514g00035 233 Gene3D - 43 230 IPR029000 -
Vium5514g00035 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 223 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 221 IPR002130 GO:0000413|GO:0003755
Vium5514g00035 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 224 - -
Vium5514g00035 233 SUPERFAMILY Cyclophilin-like 52 224 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00035 Vium-Chr5514 170888 175043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00035 70 221 U-box Gene Family AT5G67530 43.137 8.55e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00035 - - gmx:100800775 409.068