Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00034 ATGGGCACCGCAACCGCCTTTTCGCCTCCCACCGTTTCAACCACCAGTAAATGGCTGGGCTTCGTGGCCGCCGTCTGGATTCAGTGCATCTCCGGCAACAACTACACCTTCTCCAATTACTCCGATGCGCTCAAATCCCTCATGCATCTCACGCAGGTGCAACTCAACAACCTCTCCGTTGCTAAAGACATCGGAAAAGCCTTTGGGCTTCTGGCGGGACTCGCCTCCGACCGCTTCCCGACTTGGGCCATTCTCCTGATAGGCTCCGTTGAAGGCCTGATTGGATACGGAGTTCAATGGCTCGTTGTGAGCCAGAAAATCCAGCCCCTTCCCTATTGGCAGATGTGCGTGTTTCTGTGCATGGGAGGGAACAGCACGACGTGGATGAACACTGCCGTTTTGGTAACGTGCATACGCAACTTCCGTACAAACAGAGGACCCGTTTCGGGGATTTTGAAAGGCTTTGTAGGGTTGAGCACTGCGATATTCACCACGCTCTGTTCTGCGCTTTTCGCCGACGACCCTGCCTACTTCCTCGTCATGCTCTCTCTCGTTCCCCTCGTTGTTTGTCTCACCGGTATCTTTTTCCTCCGAGAGCTTCCTCCCGCCGTCGACGCCGCCGGAAACGCCGAGGAGGTCAAGTATTTCGGCGTCTTCAACGTCGTTGCCGTCCTCGTCGCGCTCTTCCTCTTGGTCTACGGCTTCGTCCCCAGCCCCGGCGTCCTGGTGTCGCGAGTTTTCGTCGCCGTTCTGCTGGTTATGCTGGCTTCGCCGTTGGGGATTCCGGTGTACACGTACTTCAAGGGACGGCTCGGAGAGGGGAATGACGTGGAGGGGCAGAGAGCGAATGAACCGTTGCTTGGTGGTGGGGAAAAGGAAAACGAAAGCGTGGCGGCGGTTGAAGAGGAGGCTTTGGTGGAGAAGAGAGCGCCGATGGTGGGTGAAGAGCACACGATAATGGAGGTGCTGAAGAGCGTGGATTTTTGGATCTTGTTCGTGTCGTTTCTCTGCGGGGTTGGAACTGGTTTGGCTGTGATGAACAATATGGGTCAAATCGGGTTGGCTCTCGGGTACCCTGATGTCTCACTTTTTGTCTCTTTGACCAGTATTTTCGGATTCTTTGGGCGGATCATCTCGGGTACCGTTTCCGAGTTCACAATCAAGAGAGCAGCAACACCAAGACCTCTCTGGAATGCAGCATCTCAGCTTCTAATGGCTGTTGGTTACATACTGATGGCCATGGCTATGCCAGGTTCTCTATACATAGGGTCTATTTTGGTTGGCATATGTTATGGAGTTAGGCTTGCAATCACAGTTCCAACAGCCTCGGAGTTATTTGGACTGAAATACTATGGTCTGATCTACAACATTCTGATTCTCAACCTTCCTCTGGGCTCTTTCCTTTTCTCTGGTTTGCTTGCTGGCATACTGTATGATATGGAAGCAACGACAACCGAGGGAGGAGGCAACACCTGTGTCGGAGGTCACTGTTACAGGCTAGTCTTTATTGTCATGACCGGAGCATGTATCGTTGGCTTCTTCTTAGACATTCTCTTGTCATTCAGAACCAAAACTGTTTACACAAAGATTTCCATGAGCAAGAAACCCAAGAAATCCTTATCAGCATCAAGCAGCCGTTGA 1641 0.5222 MGTATAFSPPTVSTTSKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQVQLNNLSVAKDIGKAFGLLAGLASDRFPTWAILLIGSVEGLIGYGVQWLVVSQKIQPLPYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGFVGLSTAIFTTLCSALFADDPAYFLVMLSLVPLVVCLTGIFFLRELPPAVDAAGNAEEVKYFGVFNVVAVLVALFLLVYGFVPSPGVLVSRVFVAVLLVMLASPLGIPVYTYFKGRLGEGNDVEGQRANEPLLGGGEKENESVAAVEEEALVEKRAPMVGEEHTIMEVLKSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDVSLFVSLTSIFGFFGRIISGTVSEFTIKRAATPRPLWNAASQLLMAVGYILMAMAMPGSLYIGSILVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTEGGGNTCVGGHCYRLVFIVMTGACIVGFFLDILLSFRTKTVYTKISMSKKPKKSLSASSSR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00034 546 SUPERFAMILY MFS general substrate transporter 32 524 IPR036259 -
Vium5514g00034 546 CDD MFS_Mch1p_like 16 512 - -
Vium5514g00034 546 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 18 528 - -
Vium5514g00034 546 Gene3D MFS general substrate transporter like domains 295 543 IPR036259 -
Vium5514g00034 546 Gene3D MFS general substrate transporter like domains 13 207 IPR036259 -
Vium5514g00034 546 Pfam Nodulin-like 17 263 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00034 Vium-Chr5514 160928 164003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00034 17 539 Nodulin-like Gene Family AT4G34950 68.431 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00034 - - gmx:100800237 875.159