Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00030 ATGAGTGGGAAAGTGAGTGGAAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGGTTCATAACCCCCGACGATGGTTCCGAGGATCTTTTCGTTCATCAATCGCAGATCAAATCTGACGGTTTCCGAAGCCTCGCTGAGGGAGAATCCGTTGAGTTTGCCATCGAATCTGACTCTGATGGACGTGCTAAGGCTGTTGATGTCACTGGTCCTGACGGTGCCAGTGTCCAGGGAACCCGTCGCGGTGGTGACGGTGGCCGTGGATATGGCGGTGGACGTGGTGGCGGAGGAGGCGGTGGATATGGAGGTGGATATGGTGGAGGTGGCGGTGGCTATGGTGGTGGTGGACGAGGTGGAGGCGGCGGCGGTGGTGCATGCTACAACTGCGGCGAATCCGGTCACCTTGCTAGGGATTGCTTCCAGGGAGGCGGAGGCGGTGGAGACAGGTACGGAGGAGGAGGCAGTGGTGGAGGAAGGTACGGCGGAGGAGGTGGCGGCGGTGGAAGGTATGGCGGAGGCGGCGGTGGCGGCGGCGGTGGAAGCTGCTACAACTGTGGAGAGTCAGGGCACTTTGCCAGAGAATGCCCAACTAATGCTCGTTGA 603 0.5954 MSGKVSGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDSDGRAKAVDVTGPDGASVQGTRRGGDGGRGYGGGRGGGGGGGYGGGYGGGGGGYGGGGRGGGGGGGACYNCGESGHLARDCFQGGGGGGDRYGGGGSGGGRYGGGGGGGGRYGGGGGGGGGGSCYNCGESGHFARECPTNAR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00030 200 Gene3D - 2 82 IPR012340 -
Vium5514g00030 200 SUPERFAMILY Retrovirus zinc finger-like domains 107 142 IPR036875 GO:0003676|GO:0008270
Vium5514g00030 200 ProSiteProfiles Zinc finger CCHC-type profile. 126 139 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 MobiDBLite consensus disorder prediction 62 91 - -
Vium5514g00030 200 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 Pfam Zinc knuckle 181 196 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Vium5514g00030 200 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Vium5514g00030 200 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Vium5514g00030 200 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Vium5514g00030 200 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Vium5514g00030 200 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Vium5514g00030 200 SMART csp_8 6 71 IPR011129 GO:0003676
Vium5514g00030 200 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Vium5514g00030 200 SUPERFAMILY Retrovirus zinc finger-like domains 163 198 IPR036875 GO:0003676|GO:0008270
Vium5514g00030 200 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Vium5514g00030 200 Gene3D - 177 200 - -
Vium5514g00030 200 Gene3D - 119 149 - -
Vium5514g00030 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 196 IPR001878 GO:0003676|GO:0008270
Vium5514g00030 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00030 Vium-Chr5514 129789 130778 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vium5514g00030 CSD 2.1e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00030 - K09250 gmx:100799708 202.601