Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00029 ATGGCTTCCCTCTATGATGTGCTTGGAATTTCAATTGGCGCAAGTTGCGTGGAAATAAAGGCTGCTTACAGAAAGCTGGCTAGAACTTACCATCCTGATGTTGTAGCCATGAATCAGAAGGAAAGCTCGGCTCACCAATTCATGATAATCCAATCGGCTTACTCAACTTTGTCTGACCCAGAAAAGAGAGCACAATATGATAGAGATAACAGATACAGAAGATCATCGGCTATGGCTTCCATGGCAGCAAGAAATCACACATTTTCCTGCGCTGGAGGAAGTGGCAGGAAATGGGAAACCGACCAGTGTTGGTAG 315 0.4508 MASLYDVLGISIGASCVEIKAAYRKLARTYHPDVVAMNQKESSAHQFMIIQSAYSTLSDPEKRAQYDRDNRYRRSSAMASMAARNHTFSCAGGSGRKWETDQCW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00029 104 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Vium5514g00029 104 CDD DnaJ 5 59 IPR001623 -
Vium5514g00029 104 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium5514g00029 104 PRINTS DnaJ domain signature 23 38 IPR001623 -
Vium5514g00029 104 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium5514g00029 104 PRINTS DnaJ domain signature 5 23 IPR001623 -
Vium5514g00029 104 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium5514g00029 104 SMART dnaj_3 2 62 IPR001623 -
Vium5514g00029 104 Pfam DnaJ domain 4 67 IPR001623 -
Vium5514g00029 104 SUPERFAMILY Chaperone J-domain 2 72 IPR036869 -
Vium5514g00029 104 Gene3D DnaJ domain 1 89 IPR036869 -
Vium5514g00029 104 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00029 Vium-Chr5514 120292 121229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00029 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 1.16e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00029 - - gmx:100305807 162.925