Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00020 ATGGAGAGATCCTATGTTTTTGTTTTTCTCTGTGTCTCCGTGCTTTGTCTCTTCCTGTCCGAACCCACCAGAGCAGAAGACGATTCCCAGCCACTACTCGCTCTCAAATCCTCCATTGACGTTCTCCACAAGCTCCCATGGCGGCAAGGAACCGACGTGTGCACCTGGAAAGGGATCAAAGACTGCTTCAACGGAAGAGTCAGAAAGCTCGTTCTGGAACACTCCAACCTAACCGGTTCTCTCGATGACAAGATCTTGAACCGTTTGGACCAGCTCCGAGTCCTCAGCTTCAAAGGAAACTCACTCTCCGGCCAAGTCCCTGACCTCTCCGCCCTGATCAACCTCAAATCGATTTTCCTCAACGACAACAACTTCTCCGGCGAGTTCCCCTCCTCGGTCGCGCTGCTCCACCGCGTCAAAGTCATTGTCCTGTCGCAAAATCACATCTCCGGCGACATTCCAGCGTCGCTTCTGAATCTCCGGCGACTCTACATCCTCTACCTGGAAGACAACGCGTTCACGGGAAGCATCCCGCCTTTCAACCAAACCAGCCTCAGGTATTTGAATGTCTCCAACAACCGACTCTCCGGCGAGATTCCGGTGACCGCCGCACTGATCCGGTTCAATGCCTCGTCGTTTTTGGGCAACCCGGGGCTCTGCGGGGAGAACATCCTCCAACCGTGCAAAAACGGCAGCGTTCCGTCGGCGCCGCCGATAAGCCCCAGCTATCCGCTGATCCCGGGAGGCACCGCGGCGGCGTCGAAGCGGACGTCATCGAACCGCACCAAACTGATAAAGATAATTGGAGGGTGCGTTGGTGGCGTTGTTTTCATACTGTTGTGCATGGTTGTGGTGTGGGCGATTTGCAGGAAGCGGAAGACAAGGGTGGGTTCCGGAACGAGGAGCAAGGGCGGTGGTGACGTGGCAGAGGGGGAGGCTGGTGCGGCGGGGAGTGCGGGAGGCGGCGGCGGCGGCGGCGAGGGCGGGGACAGTGCTAAACAAGGGGGTTTTGCGTGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGGAGGTGATCGCGAGATGAGTTATAGTTTGGAAGATTTGCTGAAAGCGTCCGCGGAGACTTTGGGGAGGGGTATTATCGGAAGTACGTATAAAGCAGTTATGGAATCAGGGTTCATTGTTACTGTTAAGAGGTTGAAGGATGCAAGATACCCTGGTTTGGAAGAATTCAGAGCTCACATTCATGTTCTTGGAAGGCTCACTCACCCTAATCTGGTCCCACTCAGGGCCTATTTTCAGGCTAAAGAAGAACGTCTTCTCGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCCCTTATTCACGGATCAAAAACATCCGGCGGGGGAAAACCTCTTCACTGGACATCCTGCCTTAAGATTGCCGAAGATCTAGCAACAGGCCTGCTCTATATCCACCAGAACCCCGGCATGACACATGGAAACCTAAAATCTTCTAATGTGTTGCTTGGTTCTGATTTTGAGTCATGTCTTACTGATTATGGTCTAACTGTTTTCCTAAATCCTGACTCAATGGACGAGCCCAGTGCCACATCTTTATTCTACAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGCTTTGGGGTCCTTGTTCTAGAGCTCTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACGTATGGTTCAGACATACCTAGGTGGGTCCGGTCAGTGCGCGAAGAAGAGACAGAGTCCGGTGATGATCCTGCCTCAGGCAATGAAGCATCAGAAGAGAAGCTTCAGGCTCTTCTGAACATTGCCATGGCATGTGTTTCACTGGTGCCAGAGAACAGGCCTACAATGAGAGAGGTTTTAAAGATGATAAGAGATGCAAGAGGGGAGGCGCATGTCTCATCTAACAGTAGTGATCACTCTCCTGGAAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA 2016 0.5218 MERSYVFVFLCVSVLCLFLSEPTRAEDDSQPLLALKSSIDVLHKLPWRQGTDVCTWKGIKDCFNGRVRKLVLEHSNLTGSLDDKILNRLDQLRVLSFKGNSLSGQVPDLSALINLKSIFLNDNNFSGEFPSSVALLHRVKVIVLSQNHISGDIPASLLNLRRLYILYLEDNAFTGSIPPFNQTSLRYLNVSNNRLSGEIPVTAALIRFNASSFLGNPGLCGENILQPCKNGSVPSAPPISPSYPLIPGGTAAASKRTSSNRTKLIKIIGGCVGGVVFILLCMVVVWAICRKRKTRVGSGTRSKGGGDVAEGEAGAAGSAGGGGGGGEGGDSAKQGGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIIGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIHVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLVLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00020 671 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Vium5514g00020 671 SUPERFAMILY L domain-like 32 222 - -
Vium5514g00020 671 Pfam Leucine rich repeat N-terminal domain 26 59 IPR013210 -
Vium5514g00020 671 Pfam Protein kinase domain 369 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5514g00020 671 Gene3D Transferase(Phosphotransferase) domain 1 442 658 - -
Vium5514g00020 671 FunFam Leucine-rich repeat receptor-like protein kinase 138 230 - -
Vium5514g00020 671 Gene3D Ribonuclease Inhibitor 182 232 IPR032675 -
Vium5514g00020 671 MobiDBLite consensus disorder prediction 645 671 - -
Vium5514g00020 671 ProSiteProfiles Protein kinase domain profile. 366 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5514g00020 671 Gene3D Phosphorylase Kinase; domain 1 353 441 - -
Vium5514g00020 671 MobiDBLite consensus disorder prediction 296 332 - -
Vium5514g00020 671 SUPERFAMILY Protein kinase-like (PK-like) 370 646 IPR011009 -
Vium5514g00020 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 640 IPR046959 -
Vium5514g00020 671 MobiDBLite consensus disorder prediction 642 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00020 Vium-Chr5514 66726 72248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00020 14 671 Receptor kinase-like Gene Family AT1G60630 61.053 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium5514g00020 Pkinase 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00020 - - gmx:100809866 1101.27