Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5514g00019 | ATGGAGAGATCCTATGTTTTTGTTTTTCTCTGTGTCTCCGTGCTTTGTCTCTTCCTGTCCGAACCCACCAGAGCAGAAGACGATTCCCAGCCACTACTCGCTCTCAAATCCTCCATTGACGTTCTCCACAAGCTCCCATGGCGGCAAGGAACCGACGTGTGCACCTGGAAAGGGATCAAAGACTGCTTCAACGGAAGAGTCAGAAAGCTCGTTCTGGAACACTCCAACCTAACCGGTTCTCTCGATGACAAGATCTTGAACCGTTTGGACCAGCTCCGAGTCCTCAGCTTCAAAGGAAACTCACTCTCCGGCCAAGTCCCTGACCTCTCCGCCCTGATCAACCTCAAATCGATTTTCCTCAACGACAACAACTTCTCCGGCGAGTTCCCCTCCTCGGTCGCGCTGCTCCACCGCGTCAAAGTCATTGTCCTGTCGCAAAATCACATCTCCGGCGACATTCCAGCGTCGCTTCTGAATCTCCGGCGACTCTACATCCTCTACCTGGAAGACAACGCGTTCACGGGAAGCATCCCGCCTTTCAACCAAACCAGCCTCAGGTATTTGAATGTCTCCAACAACCGACTCTCCGGCGAGATTCCGGTGACCGCCGCACTGATCCGGTTCAATGCCTCGTCGTTTTTGGGCAACCCGGGGCTCTGCGGGGAGAACATCCTCCAACCGTGCAAAAACGGCAGCGTTCCGTCGGCGCCGCCGATAAGCCCCAGCTATCCGCTGATCCCGGGAGGCACCGCGGCGGCGTCGAAGCGGACGTCATCGAACCGCACCAAACTGATAAAGATAATTGGAGGGTGCGTTGGTGGCGTTGTTTTCATACTGTTGTGCATGGTTGTGGTGTGGGCGATTTGCAGGAAGCGGAAGACAAGGGTGGGTTCCGGAACGAGGAGCAAGGGCGGTGGTGACGTGGCAGAGGGGGAGGCTGGTGCGGCGGGGAGTGCGGGAGGCGGCGGCGGCGGCGGCGAGGGCGGGGACAGTGCTAAACAAGGGGGTTTTGCGTGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGGAGGTGATCGCGAGATGAGTTATAGTTTGGAAGATTTGCTGAAAGCGTCCGCGGAGACTTTGGGGAGGGGTATTATCGGAAGTACGTATAAAGCAGTTATGGAATCAGGGTTCATTGTTACTGTTAAGAGGTTGAAGGATGCAAGATACCCTGGTTTGGAAGAATTCAGAGCTCACATTCATGTTCTTGGAAGGCTCACTCACCCTAATCTGGTCCCACTCAGGGCCTATTTTCAGGCTAAAGAAGAACGTCTTCTCGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCCCTTATTCACGGATCAAAAACATCCGGCGGGGGAAAACCTCTTCACTGGACATCCTGCCTTAAGATTGCCGAAGATCTAGCAACAGGCCTGCTCTATATCCACCAGAACCCCGGCATGACACATGGAAACCTAAAATCTTCTAATGTGTTGCTTGGTTCTGATTTTGAGTCATGTCTTACTGATTATGGTCTAACTGTTTTCCTAAATCCTGACTCAATGGACGAGCCCAGTGCCACATCTTTATTCTACAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGCTTTGGGGTCCTTGTTCTAGAGCTCTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACGTATGGTTCAGACATACCTAGGTGGGTCCGGTCAGTGCGCGAAGAAGAGACAGAGTCCGGTGATGATCCTGCCTCAGGCAATGAAGCATCAGAAGAGAAGCTTCAGGCTCTTCTGAACATTGCCATGGCATGTGTTTCACTGGTGCCAGAGAACAGGCCTACAATGAGAGAGGTTTTAAAGATGATAAGAGATGCAAGAGGGGAGGCGCATGTCTCATCTAACAGTAGTGATCACTCTCCTGGAAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA | 2016 | 0.5218 | MERSYVFVFLCVSVLCLFLSEPTRAEDDSQPLLALKSSIDVLHKLPWRQGTDVCTWKGIKDCFNGRVRKLVLEHSNLTGSLDDKILNRLDQLRVLSFKGNSLSGQVPDLSALINLKSIFLNDNNFSGEFPSSVALLHRVKVIVLSQNHISGDIPASLLNLRRLYILYLEDNAFTGSIPPFNQTSLRYLNVSNNRLSGEIPVTAALIRFNASSFLGNPGLCGENILQPCKNGSVPSAPPISPSYPLIPGGTAAASKRTSSNRTKLIKIIGGCVGGVVFILLCMVVVWAICRKRKTRVGSGTRSKGGGDVAEGEAGAAGSAGGGGGGGEGGDSAKQGGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIIGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIHVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLVLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI | 671 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5514g00019 | 671 | Gene3D | Ribonuclease Inhibitor | 25 | 181 | IPR032675 | - | |
Vium5514g00019 | 671 | SUPERFAMILY | L domain-like | 32 | 222 | - | - | |
Vium5514g00019 | 671 | Pfam | Leucine rich repeat N-terminal domain | 26 | 59 | IPR013210 | - | |
Vium5514g00019 | 671 | Pfam | Protein kinase domain | 369 | 633 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium5514g00019 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 442 | 658 | - | - | |
Vium5514g00019 | 671 | FunFam | Leucine-rich repeat receptor-like protein kinase | 138 | 230 | - | - | |
Vium5514g00019 | 671 | Gene3D | Ribonuclease Inhibitor | 182 | 232 | IPR032675 | - | |
Vium5514g00019 | 671 | MobiDBLite | consensus disorder prediction | 645 | 671 | - | - | |
Vium5514g00019 | 671 | ProSiteProfiles | Protein kinase domain profile. | 366 | 644 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium5514g00019 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 353 | 441 | - | - | |
Vium5514g00019 | 671 | MobiDBLite | consensus disorder prediction | 296 | 332 | - | - | |
Vium5514g00019 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 370 | 646 | IPR011009 | - | |
Vium5514g00019 | 671 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 13 | 640 | IPR046959 | - | |
Vium5514g00019 | 671 | MobiDBLite | consensus disorder prediction | 642 | 671 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5514g00019 | Vium-Chr5514 | 66726 | 72248 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5514g00019 | 14 | 671 | Receptor kinase-like Gene Family | AT1G60630 | 61.053 | 0.0 | 771 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Vium5514g00019 | Pkinase | 1.7e-35 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5514g00019 | - | - | gmx:100809866 | 1101.27 |