Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5514g00012 ATGGCATCGGCCTTCGTCAAGCTCGACGATTCCCCTATGTTCCAGAAACAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTACGGGATCGATGCCAGAAGCTATACAGTGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATAACCTTTGCTGATTCATTAGAAGCATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCGATAGGAGGTCCTGTCATAACTAAGTTTATTACCACATTGCGTGAGCTAGCTTCTTTCAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTAATTGACCGGCTGACGGAGTTTATGAACATTGATTTGCAAGATACAAAGGATTCTCGTCGTCGTTATGACAAAGCTGTCCAATCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCACAAGATATTGTATCTGAATTAGAAGAGGATCTACAAAATTCCAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATGTTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCGATTAGTGCAATAATGGATGCTCATTTGAGATACTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGTTAACCTATGCACAACAATCTAAAGAACTTGCTAATGTTGAGCAAGATAAGCTTGCAAAACGTATTCAGGAATACAGAACACAGGCAGAGTTAGAGAATATACGAGCTTCTAGCAATTTTACTGAAACTATGTCAGGTTCTGAAGGCATCCATGTTGTAGGCTTGAATTCCTACAGGAGTTTAGATTCAGGGATGCTGTCTGCAACCAAAGGGGAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAACGGTCATCAGGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAAGGAGTTTATATTATTACAGAGTCAAGGGTGTCAAACCCACGGGCTCTCAGTCATATAATTATGTTCGTTCTTATGAACAAACTAGTGGAATGTTTGGTAGATTCCGTTTAAAACACAACAGGGCTGCATCAATGAATGATGATATTTTAGGTTGTTACACTATTGATCTATGCACATCTACTATAAAGATGGATGCAGAAGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACGTTCACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTTAACAAAATTACTGGAGCTATAACATTACTTTTTAATTCACAGTTTCTTCAAGAGCCTCAATATGGTGGAGCGAATTCTGAGAGTAAAAACATAGCAACTGGTGCTTCTTTGTCATGTCATTCGGAGGATGGTCAGGAATCATTGAGTAATGACTTATATTCCACGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGTAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGTTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTCAGGGTTTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCCTACTGTAATTCTATATGGGAGGGCTTGCTTCTTCCGGATCATGAAAGGGCAGGTGAATTAAGTGTGCCTATTAAACCTTGTTCAACAGATACCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGATTTCTCAAAAGAATTCTGTTATTTATGAGTTCATTGAGGTATTTGTTCATATTCTTTAA 1851 0.3884 MASAFVKLDDSPMFQKQLFSLEETTDELRDRCQKLYSGCKKFMTALGEAYNGEITFADSLEAFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLIDRLTEFMNIDLQDTKDSRRRYDKAVQSYDQSREKFVSLKKNTPQDIVSELEEDLQNSKSTFEKSRFNLVNSLMNVEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELENIRASSNFTETMSGSEGIHVVGLNSYRSLDSGMLSATKGELQTVKQGYLLKRSSGSRGDWKRRFFVLDNQRSLYYYRVKGVKPTGSQSYNYVRSYEQTSGMFGRFRLKHNRAASMNDDILGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTFTLQAENEADRMDWVNKITGAITLLFNSQFLQEPQYGGANSESKNIATGASLSCHSEDGQESLSNDLYSTEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLLPDHERAGELSVPIKPCSTDTFQIKEKYIQAKISQKNSVIYEFIEVFVHIL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5514g00012 616 SMART PH_update 296 431 IPR001849 -
Vium5514g00012 616 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Vium5514g00012 616 CDD PH_ACAP 298 433 - -
Vium5514g00012 616 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Vium5514g00012 616 Pfam Putative GTPase activating protein for Arf 483 599 IPR001164 GO:0005096
Vium5514g00012 616 CDD ArfGap 483 597 - -
Vium5514g00012 616 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Vium5514g00012 616 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Vium5514g00012 616 CDD BAR_SFC_plant 16 217 IPR035670 -
Vium5514g00012 616 Pfam PH domain 297 428 IPR001849 -
Vium5514g00012 616 PANTHER CENTAURIN/ARF 3 602 IPR045258 GO:0005096
Vium5514g00012 616 SUPERFAMILY ArfGap/RecO-like zinc finger 481 602 IPR037278 -
Vium5514g00012 616 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Vium5514g00012 616 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 601 IPR001164 GO:0005096
Vium5514g00012 616 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Vium5514g00012 616 SUPERFAMILY PH domain-like 296 445 - -
Vium5514g00012 616 Gene3D - 289 441 IPR011993 -
Vium5514g00012 616 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Vium5514g00012 616 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Vium5514g00012 616 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Vium5514g00012 616 Gene3D Arf GTPase activating protein 467 609 IPR038508 -
Vium5514g00012 616 Coils Coil 229 249 - -
Vium5514g00012 616 SMART arf_gap_3 479 611 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5514g00012 Vium-Chr5514 27410 38970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5514g00012 489 537 C2H2 Transcription Factor Family AT3G07940 67.347 2.21e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5514g00012 K12489 - gmx:100796740 1050.43