Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5504g00007 ATGGCCAACCGGTGGTGGACCGGGTCCGTCGGTCTTGAGAACTCGGGTGACTCGATGAGGAAACCGGATCTGGGATTTTCCATGAACGAGAGTGCGGTGACTGCGAACCACGCGGGGGAAGAAGAGGAGGAGAAAGAAAACAGCGACGAGCCCAAAGAGGGAGCTATTGACGTGGCCAGCACGCGCCGCCCGAGGGGTCGTCCACCGGGCTCAAAGAACAAGCCCAAACCGCCGATATTCGTCACCCGAGACAGCCCCAACGCGATGCGAAGCCACGTCATGGAGATTGCCAGCGGCGCCGACATCGCCGACTGCGTGGTCCAGTTCGCGCGGAGGCGCCAGCGCGGCGTGTCCATTCTCAGCGGCAGCGGGGCCGTCGTGAACGTTACTCTCCGCCAGCCCACGGCTCCTGGCGCCGTCATGGCTCTCCACGGCCGCTTCGATATCCTTTCCCTCACCGGCTCGTTTCTCCCCGGACCTTCCCCTCCCGGTGCCACCGGTCTCACCATCTATCTGGCAGGAGGCCAGGGACAGATCGTTGGCGGCGGGGTGGTGGGCCCACTGGTGGCGGCTGGTCCAGTTTTGATAATGGCGGCTACGTTTTCCAATGCAACTTACGAGAGATTGCCCTTGGAGGAGGATGATCAGGAGCAGGGTGGTGGCGGCGGGTCTCCGCCGGGGATGGGAGGCGGTCCTGGCGAAGCTTCGTCGTCAATTTCGGTGTATAATAATAATGTTCCTCCGAATCTGGATCTTCCAAACGAGCAACAGGTGAACCATGAAGCTTATTCTTCTCCTTGGGGTCATGCTCCTCATGCCAGACCTCCTTTCTAA 834 0.6091 MANRWWTGSVGLENSGDSMRKPDLGFSMNESAVTANHAGEEEEEKENSDEPKEGAIDVASTRRPRGRPPGSKNKPKPPIFVTRDSPNAMRSHVMEIASGADIADCVVQFARRRQRGVSILSGSGAVVNVTLRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATGLTIYLAGGQGQIVGGGVVGPLVAAGPVLIMAATFSNATYERLPLEEDDQEQGGGGGSPPGMGGGPGEASSSISVYNNNVPPNLDLPNEQQVNHEAYSSPWGHAPHARPPF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5504g00007 277 Gene3D - 89 218 - -
Vium5504g00007 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 268 IPR014476 GO:0003680
Vium5504g00007 277 ProSiteProfiles PPC domain profile profile. 86 226 IPR005175 -
Vium5504g00007 277 MobiDBLite consensus disorder prediction 1 87 - -
Vium5504g00007 277 FunFam AT-hook motif nuclear-localized protein 89 216 - -
Vium5504g00007 277 MobiDBLite consensus disorder prediction 213 277 - -
Vium5504g00007 277 PIRSF ESCAROLA 11 277 IPR014476 GO:0003680
Vium5504g00007 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Vium5504g00007 277 MobiDBLite consensus disorder prediction 236 263 - -
Vium5504g00007 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
Vium5504g00007 277 CDD DUF296 90 173 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5504g00007 Vium-Chr5504 70416 71586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5504g00007 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 53.872 5.60e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5504g00007 - - gmx:100797639 429.098