Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5504g00002 ATGGCTTCTCTCTCATGCTCCTCCGACCTCGCTACACTCATCAACCACACCGCCACCGCCAACTACCTCTGTAACCAATTCGATTCCATTTCCAGAAAGCTCAACGATGCCACCTACGCAGTCGATAATACCTACCTTCTTTTCTCCGCCTATTTGGTATTCGCCATGCAGCTGGGTTTCGCCATGCTCTGCGCTGGATCCGTCCGAGCAAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCAGGCGGCCTCTCCTACTACCTCTTCGGCTTCGCTTTCGCTTTCGGCGCCCCTTCTAACGGCTTCATCGGCCGCCACTTCTTCGGCCTTAGAGACTACCCCACTCCCTCCACCGACTACAGCTTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCTGGAATCACCAGCGGCTCCATCGCGGAGAGAACGCAATTCGTGGCTTACCTCATTTACTCTTCTTTTCTAACCGGGTTCGTTTACCCCATCGTTTCGCATTGGTTCTGGTCGGGGGACGGTTGGGCCAGCGCCACAAGAACCGACGGGAACGTCTTGTTCGGGTCCGGGGTCATCGACTTTGCTGGCTCCGGAGTGGTTCATATGGTTGGTGGCATAGCGGGCCTGTGGGGGGCTTTAATTGAAGGCCCGAGAATCGGGCGGTTCGACAGGACGGGCCGGTCCGTTGCACTGCGCGGCCACAGCGCGTCTTTGGTTGTGTTAGGCTCGTTTCTATTATGGTTCGGGTGGTACGGGTTCAATCCCGGTTCGTTTTTTACTATAGCGAAGGGATATGGGCGCTTGGGTTATTATGGTCAATGGAGTGCCATAGGGAGGACAGCTGTCACGACGACATTGGCCGGGAGCACAGCGGCTCTGACGACGCTTTTCAGCAAGCGGTTATTGGCGGGCCACTGGAACGTGATCGACGTGTGTAACGGACTACTTGGCGGGTTCGCTGCCATCACCTCAGGCTGTGCGGTTGTGGAGCCGTGGGCCGCGATAGTGTGTGGGTTTGTGGCAGCCTGGGTTTTGATTGGGCTTAACAAGCTGGCAGCGAAAGTGGAGTACGATGACCCGTTGGAGGCGGCGCAGCTTCACGGCGGGTGTGGCGCCTGGGGGGTGTTGTTCACGGGGCTGTTCGCGAAGAGGGAGTACGTGGAAGAGATTTATGGAATTGGGAGGCCGTGCGGGGCGTTGATGGGGGGCGGCGGGAAGTTGCTGGCGGCGCAGTTGATTCAAATAGTGGTGGTGTGTGGGTGGGTTTCGGCGACGATGGGTCCTTTGTTCTACGGGCTTCATAAGTTGAATCTGTTGAGGATATCCAGGGACGATGAAACTGCAGGGATGGATTTGACGAGGCATGGAGGGTTTGCTTATGCGTACCATGACGATGAAGATGGTTCTAGCAGAGGCGTAGGATTGATGATGCGTAAAATAGAACCTGCTAGTACTTCTCCCTCTCCCCCCGTTGCACCTCTATCAATATCTTCTCTTTAG 1515 0.5644 MASLSCSSDLATLINHTATANYLCNQFDSISRKLNDATYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLRDYPTPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSGDGWASATRTDGNVLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFFTIAKGYGRLGYYGQWSAIGRTAVTTTLAGSTAALTTLFSKRLLAGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAIVCGFVAAWVLIGLNKLAAKVEYDDPLEAAQLHGGCGAWGVLFTGLFAKREYVEEIYGIGRPCGALMGGGGKLLAAQLIQIVVVCGWVSATMGPLFYGLHKLNLLRISRDDETAGMDLTRHGGFAYAYHDDEDGSSRGVGLMMRKIEPASTSPSPPVAPLSISSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5504g00002 504 Pfam Ammonium Transporter Family 45 465 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vium5504g00002 504 SUPERFAMILY Ammonium transporter 39 446 - -
Vium5504g00002 504 ProSitePatterns Ammonium transporters signature. 198 223 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vium5504g00002 504 Gene3D Ammonium transporter AmtB like domains 19 481 IPR029020 -
Vium5504g00002 504 PANTHER AMMONIUM TRANSPORTER 10 461 - -
Vium5504g00002 504 NCBIfam ammonium transporter 42 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium5504g00002 504 FunFam Ammonium transporter 23 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5504g00002 Vium-Chr5504 20082 21808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5504g00002 21 494 Inorganic Solute Cotransporters AT1G64780 80.962 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5504g00002 K03320 K07573 gmx:100797209 876.315