Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5498g00006 ATGGGGTCTACTGAGCATGGGAGAGTATCAGTTAGGGAGTTCCAGGCCAATGGAAGCCGCATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAAGCAGAAGATTCGTTGCGAGAAGGATTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGTAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATTCAGAGGTTGCAATCTTCATTTTCTGAGAAACCACCGGGCAAGAAAGGTCGTGGTCACACTGAATCAGCCTCGGGCTCTCAGCATGCGGCTAGCTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAATTAGAGAAATTTACAGAGGCTGCTAATAATTGTAAACGTATTCTTGATTCCGTTGAGAAGATATTTTATCAGGGTATTCCTAATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAGCAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGGCGAGCCCTTTTTAGTCAATGGAACCTTGATAATGATTACTGTGCAAGAATTCAGAAGTCATTTGTTATGTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTGGCAGTTCAGATTGAAGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGGTTCTTTTGAGAAAGTTTAGCCTTGGTAAGATGAAATGGGATCCATCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTACTTTAGCAAAGCAAATTGAAGAGTTGATGCCTGGAGTATACCATCGAATCGATTGTTGGAATTCTTTAGCTTTTTGTTATAGTGGTGCTGGACAAAATGACTGTGCTTTGAGCCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACATTACATCATTAGTGTTAGCAGCTCGGATCTGCAGCTCAGATCCCCATCTTGCTGCTGAGGGAGTGATCTATGCACAGAGGGCAGTCAATAATGCTCGTGACCAAAATGAGCATTTGAAAGGTGTTGCTCTACGGATGTTGGGACTTTGTCTTGGAAAGCAATCTAAGGTTGCTTCCTCTGACTCTGAGAGGTCTCGCCTTCACTCCAAAGCTTTAGAGTCATTGGTGGCAGCAATCAAATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCGCAACACCGAAACTTGTCTGCTGCTTTGCGCTCTGCGAGACATTTCTTTAATCAAACAGGTGGTTCTATGTTGAAATCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAGCAAAGATTTTCTGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGTTGAAGATATCCCAATCACGACCAATGGATGCTATTGAAACCTATAGATACCTTCTTGCATTGGTTCAAGCCCAGAATAAATCATTTGGGTCTTCCCAAATTAGTTCAAAGGTTCTGGATGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTCTCTCGTTGGAAGGATGCTGAAATCTGTCTGCAGAAGGCCAGGGAGTTGAAGAAATACTCTGCTGCAGTAATGCACACTCAAGGTGTTTTGTTTGAAGGACGTGGGCAAAATGACGAAGCTTTCCTTGCTACTATTAATGGTATACTACTTGAAGCAAACCATGTTCCATGCAAGATCTTGATGGGTGGCATGATTCAAAGATTGGGTCCAAAGTTTTTTTGTGCTGCAAGAAGCGCACTGTCTGATGCACTCCGAATAGAACCCACTAACCGCATGGCTTGGCATTGCTTGGGATTGCTTAACAAGCAAGATGGCAGAATAAGTGAAGCCGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAATCTTTCAGCTCTATACTTTGA 2082 0.4265 MGSTEHGRVSVREFQANGSRMAASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSFSEKPPGKKGRGHTESASGSQHAASLVLEAIYLKAKSLQKLEKFTEAANNCKRILDSVEKIFYQGIPNIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALFSQWNLDNDYCARIQKSFVMFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSTLAKQIEELMPGVYHRIDCWNSLAFCYSGAGQNDCALSLLRKSLHKHERPNDITSLVLAARICSSDPHLAAEGVIYAQRAVNNARDQNEHLKGVALRMLGLCLGKQSKVASSDSERSRLHSKALESLVAAIKLEPNNSDLIFELAVHYAQHRNLSAALRSARHFFNQTGGSMLKSWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQNKSFGSSQISSKVLDDKINEFDIWHGLANLYASLSRWKDAEICLQKARELKKYSAAVMHTQGVLFEGRGQNDEAFLATINGILLEANHVPCKILMGGMIQRLGPKFFCAARSALSDALRIEPTNRMAWHCLGLLNKQDGRISEAADCFQAASMLEESDPIESFSSIL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5498g00006 693 Gene3D Tetratricopeptide repeat domain 533 612 IPR011990 GO:0005515
Vium5498g00006 693 PANTHER PROTEIN NPG1 8 690 IPR043376 -
Vium5498g00006 693 SMART tpr_5 581 614 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 377 421 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 651 684 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 117 150 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 547 580 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 457 490 IPR019734 GO:0005515
Vium5498g00006 693 SMART tpr_5 301 334 IPR019734 GO:0005515
Vium5498g00006 693 Gene3D Tetratricopeptide repeat domain 20 206 IPR011990 GO:0005515
Vium5498g00006 693 Gene3D Tetratricopeptide repeat domain 237 532 IPR011990 GO:0005515
Vium5498g00006 693 SUPERFAMILY TPR-like 537 677 IPR011990 GO:0005515
Vium5498g00006 693 MobiDBLite consensus disorder prediction 88 109 - -
Vium5498g00006 693 SUPERFAMILY TPR-like 30 201 IPR011990 GO:0005515
Vium5498g00006 693 SUPERFAMILY TPR-like 404 522 IPR011990 GO:0005515
Vium5498g00006 693 Pfam Tetratricopeptide repeat 28 75 - -
Vium5498g00006 693 Gene3D - 613 686 - -
Vium5498g00006 693 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5498g00006 Vium-Chr5498 16895 29170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5498g00006 11 693 Calmodulin-binding Proteins AT2G43040 69.578 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5498g00006 K21843 - gmx:100814609 1151.35