Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5491g00010 ATGCAGTTAACCTGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCCCAAAAGCAGGCACTGGCAGAATCAACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 441 0.4354 MQLTCQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5491g00010 146 Pfam ELK domain 30 51 IPR005539 GO:0003677
Vium5491g00010 146 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vium5491g00010 146 CDD homeodomain 62 114 IPR001356 GO:0003677
Vium5491g00010 146 SMART HOX_1 52 117 IPR001356 GO:0003677
Vium5491g00010 146 MobiDBLite consensus disorder prediction 1 19 - -
Vium5491g00010 146 SUPERFAMILY Homeodomain-like 52 124 IPR009057 -
Vium5491g00010 146 ProSiteProfiles ELK domain profile. 30 50 IPR005539 GO:0003677
Vium5491g00010 146 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 120 - -
Vium5491g00010 146 FunFam Homeobox protein knotted-1-like 2 55 117 - -
Vium5491g00010 146 SMART ELK_2 30 51 IPR005539 GO:0003677
Vium5491g00010 146 ProSiteProfiles 'Homeobox' domain profile. 50 113 IPR001356 GO:0003677
Vium5491g00010 146 MobiDBLite consensus disorder prediction 1 23 - -
Vium5491g00010 146 Gene3D - 48 122 - -
Vium5491g00010 146 Pfam Homeobox KN domain 70 109 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5491g00010 Vium-Chr5491 57265 58558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5491g00010 9 140 Homeobox Transcription Factor Family AT1G62360 78.519 9.81e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium5491g00010 Homeobox_KN 9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5491g00010 - - vum:124840896 287.345