Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5489g00001 ATGAAGAGGAACAATTTCATGAAAGACTACACTCACACTTGTGCCAACAACAACCCATCAAAAGACTTCACCCATGTTGTCAACTGTTACAACAACAAGCAGAACCAGATGGCTAAAGACTTGTGGGAGTGCAGCACCAACTCTCACAGCAATGCAGATCAGGACTATGTCAATGGCTTCCCTTGGCCTCCAAGATCATACACTTGTAGCTTCTGCAGGAAGGAGTTCAAGTCTGCTCAGGCTCTTGGTGGCCACATGAATGTTCATAGGCGGGATAGAGCAAGGTTGAGACAGTCACCCCCAGCTGAAGGTCAAGCAGCCCATATGTTCAACCTTAACCTTGACCCTACCACAACAAACCCTAACAACTCAACCTCATCTTGGTCCTCGTTACCACCATCTTCATCTTCTGCAACTCTCAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGACTTGAAGAGATGGGTTCTTGTGGATGGCATTCTGTTGAACCCTTTGAGCACAAACACCCCAGAGCCCGCTAAGTCAAAGATTCCAGAATCTTTATCAGCCGGGGCTGGAGAATATGATCATGCTTTTGCAAGAGAAGATGGGTTCACAGTGTTGAAGAAAGGAGAAATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAACTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 732 0.459 MKRNNFMKDYTHTCANNNPSKDFTHVVNCYNNKQNQMAKDLWECSTNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQAAHMFNLNLDPTTTNPNNSTSSWSSLPPSSSSATLKPVTCTLPLFVSPTPPSPSSDLKRWVLVDGILLNPLSTNTPEPAKSKIPESLSAGAGEYDHAFAREDGFTVLKKGEILRMDLEIGLPRTYDLDLELRLGTTYS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5489g00001 243 Gene3D Classic Zinc Finger 63 111 - -
Vium5489g00001 243 MobiDBLite consensus disorder prediction 112 135 - -
Vium5489g00001 243 Pfam C2H2-type zinc finger 67 91 - -
Vium5489g00001 243 SMART c2h2final6 67 89 IPR013087 -
Vium5489g00001 243 PANTHER OS07G0101800 PROTEIN 42 240 - -
Vium5489g00001 243 SUPERFAMILY beta-beta-alpha zinc fingers 64 93 IPR036236 -
Vium5489g00001 243 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Vium5489g00001 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Vium5489g00001 243 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5489g00001 Vium-Chr5489 25105 26283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5489g00001 42 239 C2H2 Transcription Factor Family AT3G23130 42.500 5.14e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium5489g00001 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5489g00001 - - var:108333719 456.062