Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5483g00001 TTTTCTTATCTTTCTTTTTTGTGTATTGTCCCATTTCACGTGCTCTATAGGTACCAAGCTTCAAAGGATGATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAACTGAGTATGTCAATGTGTCTAGGTGGTTCAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTAAGGGATCTCTTGTTGCTGAGCCTGTTGCAACTCCCCCAGCTGCTGATACAAAGGCTGCTGCTGCTGAGGATGACGATGATGATGATGATGTGGATTTGTTTGGTGAAGAGACAGAGGAAGAGAAGAAGGCAGCGGAGGAACGGGCAGCTGCAGCGAAGGCATCTGGAAAAAAGAAAGAATCCGGGAAGTCATCTGTTCTGATGGATGTGAAACCATGGGATGATGAAACGGACATGAAGAAGCTCGAGGAAGCAGTGAGATCTGTTAGCATGGAAGGCTTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGCATCAAGAAACTGCAAATTATGCTTACTATCGTGGATGACCTAGTTTCTGTCGACACTCTTATTGAGGAACGTCTCACAGTTGAGCCCATCATTGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAATAAAATTTAA 660 0.45 FSYLSFLCIVPFHVLYRYQASKDDLTVYAALPTAPSTEYVNVSRWFKHIDALLRISGVSGEGSGVTVKGSLVAEPVATPPAADTKAAAAEDDDDDDDVDLFGEETEEEKKAAEERAAAAKASGKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSVSMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEERLTVEPIIEYVQSCDIVAFNKI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5483g00001 219 Pfam EF-1 guanine nucleotide exchange domain 132 219 IPR014038 GO:0003746|GO:0006414
Vium5483g00001 219 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 208 219 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vium5483g00001 219 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 94 102 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vium5483g00001 219 CDD EF1B 128 219 IPR014038 GO:0003746|GO:0006414
Vium5483g00001 219 SMART EF1_GNE_2 130 219 IPR014038 GO:0003746|GO:0006414
Vium5483g00001 219 MobiDBLite consensus disorder prediction 79 99 - -
Vium5483g00001 219 SUPERFAMILY eEF-1beta-like 127 219 IPR036219 -
Vium5483g00001 219 FunFam Elongation factor 1-beta 1 like 124 219 - -
Vium5483g00001 219 Coils Coil 102 122 - -
Vium5483g00001 219 Gene3D - 123 219 IPR014717 -
Vium5483g00001 219 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 17 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5483g00001 Vium-Chr5483 392 1967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5483g00001 13 219 Eukaryotic Initiation Factors Gene Family AT2G18110 78.037 1.15e-97 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5483g00001 K03232 - gmx:100777627 282.722