Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5482g00002 ATGGCGAGTAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCCGCATCTCAACTGTGGAACCAAATTCAAGAACGAATCTCCAAACATTCCTTCGACACTCCTCTCTACCGATTCAATATCCCTAACCTCCGCGTTGGAACCCTAGATTCTCTGCTCTCTCTCAGTGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCTGGTGTGGACAGTGGCGGCCTCACCGTTGACGGTGTCCCCGTGGATTCCTACTTGACTAGGTTTGTTTGGGATGAAGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATTCGTAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTTAAGCCAGAGGACATTATAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGACTGGCTTTCAAGCTACGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTACGAGGACAACGAATATGCTCTGTATACTGTAACACTCTTTAGTCGAGTTGCAGATAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCAAGAAACACACGAGAACCGAAAGCAAGAGTTAGATAAATTGGTACAAGATCAGGAAAGACTGAAGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCCGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTGGCTCCGTCTGTGAAATCTGAGAAGAAAGTGCGCTCTATCCTTGAAACGTTGAGTGATAGTACAAACAGTGCATACTGGAAGATTGAGGATGACGTAGGTACTGGGATGGTTGGCCTTGCAGGTGATTCCGATGCTCACCCTTATGTTTCTTTCACTATCAATCTTGCTTGA 1131 0.4527 MASRYWAVSLPVHNSASQLWNQIQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGVDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHENRKQELDKLVQDQERLKASLLQWCFTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILETLSDSTNSAYWKIEDDVGTGMVGLAGDSDAHPYVSFTINLA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5482g00002 376 Gene3D - 163 251 - -
Vium5482g00002 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vium5482g00002 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium5482g00002 376 Gene3D - 41 312 - -
Vium5482g00002 376 Gene3D Vacuolar atp synthase subunit c; domain 1 8 335 - -
Vium5482g00002 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium5482g00002 376 Coils Coil 254 277 - -
Vium5482g00002 376 FunFam V-type proton ATPase subunit C 163 251 - -
Vium5482g00002 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5482g00002 Vium-Chr5482 2925 11933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5482g00002 1 376 Primary Pumps ATPases(2) AT1G12840 82.713 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5482g00002 K02148 - gmx:100813963 709.909