LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5482g00002	ATGGCGAGTAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCCGCATCTCAACTGTGGAACCAAATTCAAGAACGAATCTCCAAACATTCCTTCGACACTCCTCTCTACCGATTCAATATCCCTAACCTCCGCGTTGGAACCCTAGATTCTCTGCTCTCTCTCAGTGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCTGGTGTGGACAGTGGCGGCCTCACCGTTGACGGTGTCCCCGTGGATTCCTACTTGACTAGGTTTGTTTGGGATGAAGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATTCGTAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTTAAGCCAGAGGACATTATAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGACTGGCTTTCAAGCTACGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTACGAGGACAACGAATATGCTCTGTATACTGTAACACTCTTTAGTCGAGTTGCAGATAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCAAGAAACACACGAGAACCGAAAGCAAGAGTTAGATAAATTGGTACAAGATCAGGAAAGACTGAAGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCCGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTGGCTCCGTCTGTGAAATCTGAGAAGAAAGTGCGCTCTATCCTTGAAACGTTGAGTGATAGTACAAACAGTGCATACTGGAAGATTGAGGATGACGTAGGTACTGGGATGGTTGGCCTTGCAGGTGATTCCGATGCTCACCCTTATGTTTCTTTCACTATCAATCTTGCTTGA	1131	0.4527	MASRYWAVSLPVHNSASQLWNQIQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGVDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHENRKQELDKLVQDQERLKASLLQWCFTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILETLSDSTNSAYWKIEDDVGTGMVGLAGDSDAHPYVSFTINLA	376

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5482g00002	376	Gene3D	-	163	251	-	-
	Vium5482g00002	376	SUPERFAMILY	Vacuolar ATP synthase subunit C	2	375	IPR036132	GO:0015078\|GO:0033180\|GO:1902600
	Vium5482g00002	376	CDD	V-ATPase_C	5	373	IPR004907	GO:0033180\|GO:0046961\|GO:1902600
	Vium5482g00002	376	Gene3D	-	41	312	-	-
	Vium5482g00002	376	Gene3D	Vacuolar atp synthase subunit c; domain 1	8	335	-	-
	Vium5482g00002	376	Pfam	V-ATPase subunit C	5	369	IPR004907	GO:0033180\|GO:0046961\|GO:1902600
	Vium5482g00002	376	Coils	Coil	254	277	-	-
	Vium5482g00002	376	FunFam	V-type proton ATPase subunit C	163	251	-	-
	Vium5482g00002	376	PANTHER	V-TYPE PROTON ATPASE SUBUNIT C	2	375	IPR004907	GO:0033180\|GO:0046961\|GO:1902600

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5482g00002	Vium-Chr5482	2925	11933	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium5482g00002	1	376	Primary Pumps ATPases(2)	AT1G12840	82.713	0.0	657

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5482g00002	K02148		-	gmx:100813963	709.909

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