Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5477g00010 ATGTCTAGCCAAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCGAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAAGCGGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4588 MSSQRSRQHSGSTRISDDQIIELVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5477g00010 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Vium5477g00010 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vium5477g00010 92 FunFam Transcription factor ILI6 5 87 - -
Vium5477g00010 92 Gene3D - 2 83 IPR036638 GO:0046983
Vium5477g00010 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 77 IPR036638 GO:0046983
Vium5477g00010 92 Coils Coil 55 75 - -
Vium5477g00010 92 CDD bHLH_AtPRE_like 10 75 - -
Vium5477g00010 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5477g00010 Vium-Chr5477 97702 99869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5477g00010 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 2.57e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5477g00010 HLH 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5477g00010 - - gmx:100796852 171.014