Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5477g00009 ATGAGTGAGCAGAGAAATGAATTGTGGTATGGTCCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACTCCCTCTTATTTGACTGGAGAATTCCCAAGGGATTATGGATGGGACACTACTGGATTGTCTGCTAATCCTGAAGCATTTTCCAAGAACAGGGCTCTTGAGGATGAGTTAGTCGAGCAGAGCACACAAGGTACATTCACTCCCGAGGGTCGTGAGGACATATTGGCAGTTGCCATTGGTCGTCCAGAGCATTCTGGACGTGTTCGAGGTGTTGGTAAATTTATTGGCATTCGTCAATTCTTCGGTCCTCCAACAAATCATCATAGTAAAGCCCATGTTAGTGAGGAGGTCCTCAAGGGTATAAGAGAAGAAATTAGACAGGAGATGAGGGAGGAGATCAGCGAGATGAAGAAAGAGTACGGTGATATGAGAGCACAATTGAAGAAGGAGTACTCTGATATGCGGGCACAATTGTTAGCAGATGTGCGAGCAGAATTAGCCTCCTCCTCAAGCCAACCTAGGAATCTTCCTCAACCTTCTAATCTTTGTATAAGCACAAAGGAGAGTTGTGATGTTTCTCCTCAAAACGCTTCTCCCACTATTGATGCAGACTACGAGTTGTTTAGTGATGATGCCCTACAGTGCTTGGTGGCCTTAGGTAAAATGTATACATTGGGGTCAACTATACACCATGAAACCATTACAGCTGATATGATGAGAGTGGTGGTTGTAGACGTACGAAATGCTACAGCTCGAGTCCCTGTGCCCACTGAGGATGTTCAGACAGTGGGACATGCCCTTGGAAATTTTATCCTTTGGCCCCTTAGATTATCAAGAGCAATTGTAAAGAAGGTTGAAGCACAAGGGCAGGAAGATATGAATGAATCACTGCAACAACAGTTGCAGCCGCCACAACACAGAATTCTAGAACAACTTGGTGTGTTGGCAGTGAAGATCTCCCTTTCTCCTATAGAGTTACAAATGCCTCCTGAAGTCACAAACAGGACATCTTCACTCTCTTTCTTCATATGTCAAAGGGATATTTTTGAAATTCTCTCTGGCACTGATATGTTATGTATATCAGTACTACAACTTTGGTTGTTGTATTTACATCGGTTGACCATTGAAAAGAAGAATGATCACATTTATGGTTTTATTGACCCTGTTGCCATTCAAGGAGTTGGGAATAAAGGTGAAGAGGTCCAAAACTACCTCTTAGAGGCTTTTGTAAACGGAAAAAAGCAAGTGTACTTAGCACCTTATTTGCAACAGGGTCACTGGCAATTGTTACTAATTCTTCCTCAACAGTTTCTTATAGTTCTCTTATATTCATTGCACAAAAAACCTCACACTTTGGCAATTAAAAATACACTAATATTAGTGGTTGAGGCATATTCAAGGTTGCAGGGAACACATATCGTCTCTAGAAAGAAGTTGCAGTTCATTGCACCAACTGTAAGTAGTTAA 1479 0.4212 MSEQRNELWYGPDRVKYLGPFSAQTPSYLTGEFPRDYGWDTTGLSANPEAFSKNRALEDELVEQSTQGTFTPEGREDILAVAIGRPEHSGRVRGVGKFIGIRQFFGPPTNHHSKAHVSEEVLKGIREEIRQEMREEISEMKKEYGDMRAQLKKEYSDMRAQLLADVRAELASSSSQPRNLPQPSNLCISTKESCDVSPQNASPTIDADYELFSDDALQCLVALGKMYTLGSTIHHETITADMMRVVVVDVRNATARVPVPTEDVQTVGHALGNFILWPLRLSRAIVKKVEAQGQEDMNESLQQQLQPPQHRILEQLGVLAVKISLSPIELQMPPEVTNRTSSLSFFICQRDIFEILSGTDMLCISVLQLWLLYLHRLTIEKKNDHIYGFIDPVAIQGVGNKGEEVQNYLLEAFVNGKKQVYLAPYLQQGHWQLLLILPQQFLIVLLYSLHKKPHTLAIKNTLILVVEAYSRLQGTHIVSRKKLQFIAPTVSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5477g00009 492 SUPERFAMILY Chlorophyll a-b binding protein 8 58 - -
Vium5477g00009 492 Coils Coil 130 161 - -
Vium5477g00009 492 Gene3D Chlorophyll a/b binding protein domain 16 60 - -
Vium5477g00009 492 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 58 IPR001344 GO:0009765|GO:0016020
Vium5477g00009 492 SUPERFAMILY Cysteine proteinases 345 477 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5477g00009 Vium-Chr5477 77653 80135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5477g00009 8 58 Chloroplast and Mitochondria Gene Families AT2G05070 78.431 1.17e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5477g00009 - - vum:124840880 945.266