Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5477g00002 ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACGCACGAAGAAGATCACCACCACCTCCCTTCAACCTCTGTCAACGCCTTTCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCGCCATTGATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCAAAGGCTTTGGGGTTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGAGTCAGAATCAGAAATTACAGGCAGAGATATCTGTAGTATGA 516 0.4671 MAFPPSHSFTFHTHEEDHHHLPSTSVNAFPSLPPQHFQGGAPPLMLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKSQNQKLQAEISVV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5477g00002 171 SMART HOX_1 77 138 IPR001356 GO:0003677
Vium5477g00002 171 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vium5477g00002 171 SUPERFAMILY Homeodomain-like 73 136 IPR009057 -
Vium5477g00002 171 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Vium5477g00002 171 Gene3D - 75 143 - -
Vium5477g00002 171 CDD homeodomain 79 135 IPR001356 GO:0003677
Vium5477g00002 171 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Vium5477g00002 171 Coils Coil 126 167 - -
Vium5477g00002 171 Pfam Homeobox associated leucine zipper 134 168 IPR003106 GO:0006355|GO:0043565
Vium5477g00002 171 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vium5477g00002 171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 169 IPR045224 GO:0003700
Vium5477g00002 171 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Vium5477g00002 171 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Vium5477g00002 171 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5477g00002 Vium-Chr5477 10989 12684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5477g00002 1 171 Homeobox Transcription Factor Family AT5G15150 59.259 5.98e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium5477g00002 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5477g00002 K09338 - gmx:100797920 288.115