Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5477g00001 ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACGCACGAAGAAGATCACCACCACCTCCCTTCAACCTCTGTCAACGCCTTTCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTGCACCGCCATTGATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCAAAGGCTTTGGGGTTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGAGTCAGAATCAGAAATTACAGGCAGAGTTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAAATGGAATAACCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTCATTTAGAAATCTCAAGAGCACCAATTATGAACAACGCTACATCTTGTCAAGCACCTTTTCCCACCAGCATCACTCAGATCCTTCAATATTCGTCAAAACCAGATTTCCATGATGATGACTTCTGCAACGTGATTCACAATGCTGCACAACAAAACTTTTGGCCATGGCCTGGTCAACAGAGCCACCATTTCCATTGA 804 0.4515 MAFPPSHSFTFHTHEEDHHHLPSTSVNAFPSLPPQHFQGGAPPLMLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKSQNQKLQAELQAVKSRGWCENGITSLKKETEGSWSNGSDNSSDIHLEISRAPIMNNATSCQAPFPTSITQILQYSSKPDFHDDDFCNVIHNAAQQNFWPWPGQQSHHFH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5477g00001 267 SMART HOX_1 77 138 IPR001356 GO:0003677
Vium5477g00001 267 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vium5477g00001 267 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Vium5477g00001 267 Coils Coil 126 174 - -
Vium5477g00001 267 Gene3D - 74 143 - -
Vium5477g00001 267 SUPERFAMILY Homeodomain-like 73 136 IPR009057 -
Vium5477g00001 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 217 IPR045224 GO:0003700
Vium5477g00001 267 CDD homeodomain 79 135 IPR001356 GO:0003677
Vium5477g00001 267 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Vium5477g00001 267 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Vium5477g00001 267 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vium5477g00001 267 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Vium5477g00001 267 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Vium5477g00001 267 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5477g00001 Vium-Chr5477 10395 12679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5477g00001 1 259 Homeobox Transcription Factor Family AT5G15150 47.917 1.91e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium5477g00001 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5477g00001 K09338 - gmx:100797920 385.571