Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5476g00003 ATGGCTTTCTCCGACTCTTCTTCTGGCCGCAACTCTCTCATCCCCTCCTTCCTATACTCCTCGTCCTCCAAGACGCTTCCTCTCCACCGTATGCTCCACTCCACCGCCGCCGCCGCCCCACCCTCGGCACCGCCGGCAAACCTCGATTCTGGATCGCGCGGCTTCATGATTCACTCTCCCAGCGAGTCACGTAAAATCGAGCTGTACTCTCCCGCCTTCTACGCCGCCTGTACTGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGGCCGTCACTCCTCTTGACCTTGTCAAGTGTAATATGCAGATCGACCCTGCTAAGTACAAGAACATCACATCTGGATTTGGGGTTTTGCTTAAGGAGCAGGGCTTCAGGGGCTTTTTCCGTGGTTGGGTGCCTACCTTGCTTGGTTACAGTGCCCAGGGTGCTTGCAAATTCGGATTTTACGAGTTCTTTAAGAAGTATTACTCTGATATTGCTGGTCCAGAGTATGCTAGCAAGTACAAGACCTTGATTTACCTTGCTGGTTCCGCTTCTGCCGAGGTTATTGCTGATGTTGCTCTTTGCCCCTTCGAGGCTGTGAAGGTCCGTGTCCAAACACAGCCTGGTTTTGCTAGGGGGTTGGCTGATGGGCTCCCAAAATTTGTGAAATCTGAAGGAACTTTGGGGCTGTACAAGGGAATAGTGCCTCTGTGGGGACGACAAATTCCATACACAATGATGAAGTTTGCTTCATTTGAGACCATAGTGGAGCTGATCTATAAGCATGCCATTCCTACTCCAAAGAATGAGTGCACCAAAAGCCTGCAACTCGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTGCTTTGTGCAATCGTGTCTCATCCTGCTGATAATCTTGTCTCTTTCCTGAACAATGCTAAAGGAGCAACAGTTGGTGATGCGGTGAGTAAGCTTGGTTTGTGGGGTCTCTTCACCCGTGGTCTTCCCCTCCGTATTGTGATGATTGGAACTCTTACTGGTGCCCAATGGGGAATATATGATGCTTTCAAAGTCTTTGTTGGGCTGCCAACAACTGGTGGTCCTGCTCCTGCCGCTGCTCCAGCTCCAGCTCCTGGTTCTGACCTAGCAAAGGCGTAA 1128 0.5124 MAFSDSSSGRNSLIPSFLYSSSSKTLPLHRMLHSTAAAAPPSAPPANLDSGSRGFMIHSPSESRKIELYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKNITSGFGVLLKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYASKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLADGLPKFVKSEGTLGLYKGIVPLWGRQIPYTMMKFASFETIVELIYKHAIPTPKNECTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVSKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAPAPGSDLAKA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5476g00003 375 Gene3D Mitochondrial carrier domain 72 350 IPR023395 -
Vium5476g00003 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 156 IPR018108 -
Vium5476g00003 375 FunFam Phosphate carrier protein, mitochondrial 72 350 - -
Vium5476g00003 375 SUPERFAMILY Mitochondrial carrier 75 345 IPR023395 -
Vium5476g00003 375 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 52 360 IPR044677 GO:0005315|GO:1990547
Vium5476g00003 375 Pfam Mitochondrial carrier protein 75 158 IPR018108 -
Vium5476g00003 375 Pfam Mitochondrial carrier protein 171 257 IPR018108 -
Vium5476g00003 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5476g00003 Vium-Chr5476 10076 12971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5476g00003 7 375 Chloroplast and Mitochondria Gene Families AT5G14040 77.249 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5476g00003 K15102 - gmx:548006 660.988