Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5465g00002 ATGAGGAAACCTGCTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAAAAACTCATAGATTATATCAACAAACACGGTTTACTTCGGTGTGGCAAAAGTTGTAGACTGAGATGGATAAACTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATTAAGCTTCATGCGCTACTTGGCAACCGGTGGTCACTTATAGCAGGGAGATTGCCTGGTCGTACAGATAACGAAGTGAAGAACTATTGGAATTCTCATATAAAAAGAAAGCTAATTAGCAAAGGCATTGATCCAAATAATCATCGATTAGATCATAAAGTCCCTTTCCTTCAGAATCCACCCATGTCTGAAGATGCCTCAGAACCTTTTGGCACGAAAGTCGTTGAAAAGAACAAGCCATGTAAATCACCTCGTCATGTTTATGGTGATGTCTCAGACGATGCAAGTGGCGAGGCTCAGTCATCATATGCCCTTCCGGATTTAAACCTTGATCTCTCTATCGCCATACCTTCAGAATCACACACTATTTCTCAAAACAATCTAAAACCCTTTCGTCAATCTTATTCATCCAGGAAACTGCCTTATGATTCTCCTTCTACACTTCTTCTGTTTCAGTAA 654 0.4021 MRKPASDIKDLNKGAWSKQEDQKLIDYINKHGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLDHKVPFLQNPPMSEDASEPFGTKVVEKNKPCKSPRHVYGDVSDDASGEAQSSYALPDLNLDLSIAIPSESHTISQNNLKPFRQSYSSRKLPYDSPSTLLLFQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5465g00002 217 ProSiteProfiles Myb-like domain profile. 8 48 IPR001005 -
Vium5465g00002 217 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Vium5465g00002 217 Pfam Myb-like DNA-binding domain 54 98 IPR001005 -
Vium5465g00002 217 Pfam Myb-like DNA-binding domain 13 48 IPR001005 -
Vium5465g00002 217 CDD SANT 56 99 IPR001005 -
Vium5465g00002 217 FunFam MYB transcription factor 55 115 - -
Vium5465g00002 217 Gene3D - 55 119 - -
Vium5465g00002 217 Gene3D - 13 53 - -
Vium5465g00002 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Vium5465g00002 217 MobiDBLite consensus disorder prediction 124 151 - -
Vium5465g00002 217 SMART sant 12 50 IPR001005 -
Vium5465g00002 217 SMART sant 53 101 IPR001005 -
Vium5465g00002 217 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 144 - -
Vium5465g00002 217 SUPERFAMILY Homeodomain-like 11 95 IPR009057 -
Vium5465g00002 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 48 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5465g00002 Vium-Chr5465 30 1394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5465g00002 2 182 MYB Transcription Factor Family AT2G16720 52.020 4.88e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5465g00002 Myb_DNA-binding 4.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5465g00002 K09422 - gmx:100814923 330.487