Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5465g00001 ATGAGGAAACCTGCTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAAAAACTCATAGATTATATCAACAAACACGGTGAGGTTTGTTGGCGTACACTCCCTCAGGCTGCAGGTTTACTTCGGTGTGGCAAAAGTTGTAGACTGAGATGGATAAACTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATTAAGCTTCATGCGCTACTTGGCAACCGGTGGTCACTTATAGCAGGGAGATTGCCTGGTCGTACAGATAACGAAGTGAAGAACTATTGGAATTCTCATATAAAAAGAAAGCTAATTAGCAAAGGCATTGATCCAAATAATCATCGATTAGATCATAAAGTCCCTTTCCTTCAGAATCCACCCATGTCTGAAGATGCCTCAGAACCTTTTGGCACGAAAGTCGTTGAAAAGAACAAGCCATGTAAATCACCTCGTCATGTTTATGGTGATGTCTCAGACGATGCAAGTGGCGAGGCTCAGTCATCATATGCCCTTCCGGATTTAAACCTTGATCTCTCTATCGCCATACCTTCAGAATCACACACTATTTCTCAAAACAATCTAAAACCCTTTCGTCAATCTTATTCATCCAGGAAACTGCCTTATGATTCTCCTTCTACACTTCTTCTGTTTCAGTAA 690 0.4116 MRKPASDIKDLNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLDHKVPFLQNPPMSEDASEPFGTKVVEKNKPCKSPRHVYGDVSDDASGEAQSSYALPDLNLDLSIAIPSESHTISQNNLKPFRQSYSSRKLPYDSPSTLLLFQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5465g00001 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 155 - -
Vium5465g00001 229 FunFam MYB transcription factor 67 127 - -
Vium5465g00001 229 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium5465g00001 229 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vium5465g00001 229 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium5465g00001 229 CDD SANT 68 111 IPR001005 -
Vium5465g00001 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vium5465g00001 229 CDD SANT 15 60 IPR001005 -
Vium5465g00001 229 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium5465g00001 229 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vium5465g00001 229 Gene3D - 5 66 - -
Vium5465g00001 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vium5465g00001 229 FunFam MYB-related transcription factor 12 65 - -
Vium5465g00001 229 MobiDBLite consensus disorder prediction 136 163 - -
Vium5465g00001 229 Gene3D - 67 131 - -
Vium5465g00001 229 SMART sant 12 62 IPR001005 -
Vium5465g00001 229 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5465g00001 Vium-Chr5465 30 1394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5465g00001 2 194 MYB Transcription Factor Family AT2G16720 56.566 1.49e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5465g00001 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5465g00001 K09422 - gmx:100814923 365.925