Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5461g00014 ATGGGGTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCGGTTCATGGCCCTGACGACCCAAATCGGTGGCAACATGTGGCCAACGCCGTGGGGGGAAAATCTGTAGAAGAGGTGAAAATGCACTATGAGATTCTCCAGGAAGATGTCATTCGAATTGAGCATGACCAAATTCCACTACCCAGGTACAGAGGTGCCGGCATCAATGGAAGACAAATTGACAATGAACAAAGGCGAATGAGGAATCTGACTCTCCGATGA 267 0.4869 MGWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVEEVKMHYEILQEDVIRIEHDQIPLPRYRGAGINGRQIDNEQRRMRNLTLR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5461g00014 88 Gene3D - 2 50 - -
Vium5461g00014 88 SMART sant 3 51 IPR001005 -
Vium5461g00014 88 CDD SANT 3 45 IPR001005 -
Vium5461g00014 88 FunFam Transcription factor SRM1 1 62 - -
Vium5461g00014 88 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Vium5461g00014 88 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Vium5461g00014 88 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Vium5461g00014 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vium5461g00014 88 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Vium5461g00014 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 75 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5461g00014 Vium-Chr5461 66923 68823 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium5461g00014 Myb_DNA-binding 8.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5461g00014 - - gmx:100789698 162.54