Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5461g00012 ATGCAAGCGATCATGCCACTAGTTTTGGCAAGCAGCACAACAGACAAACTAAAAATGTCATACGAATACGAGAATTATGACCCCTCCTTCCCCGACCAACCTGTGGTTGACTTATACCTTCCTGTTTGGGCAAGGTTACCAGCTTTCCACTCGAAACCAGCTTTCATTTGGGCTCAAGACTTTCACACCACCACTACCCTCACCTACCAACAACTCAACGACACTGTTCATCTCATCTCATCACAGCTGCAGGGTTCATTGCAAAGAGGAGACACTGTACTTCTTCTCTGCTCTCCAGGACTTGACCTAGTTGAGCTCATTTTCGGCTGCCAAAGAGCTGGTCTCTTGAGCGTACCTATAGTCCCTCCTCACCCTTCTTTCTCCAATCAAAACTACCACCACCTCGTAAGAGCCATTTCTCAGACCAAACCCAAAGCTGCCATAGCTCACTCTCACTACATTTCAAGCATTCGACGCTACCTCTCTTCTCCCCACAACAACACCAAGCTAGCTCACATGCTGCAAACCATCCACTGGATTTCCATTGACCATGTCAAACACGGCAAAGCCGTCGTTACTGTAAACAACCGTGATTCCCTAACATACAGTGGTTGTGCAGCAGATGAAGTTTATTTGGTTCAGTACACTTCTGGAGCCACTGGTGTCCCAAAACCCGTGCTTGTCACTGCTGGCTCAGCTGCTCACAACGTTAGAACTGCCAGAAAATCTTACGATCTTCATCCAAACAGCACCATCGTTTCGTGGCTGCCACAGTATCATGATTGTGGCCTCATGTTTCTGTTGCTGACCGTTGTCTCCGGTGCCACGTGTGTTCTCACGTCCCCAAACGCGTTCATCAAACGCCCCAGACTCTGGCTTGAACTCTTGTCCGAATTCAAGGCCACTTGCACTCCCGTTCCCTCGTTCACATTGCCACTAGTCATCAAGCGTGGAGGGATTCACCAAAGCGCTTTACCCATCAACCTGTCAACCTTGAAGAACCTTATAATCATCAATGAACCTATCTATAGAGACTCTGTGGAAGAATTCGTTCATACTTTTTCACCATTCGGGTTAAGCCCTTCTTCTATCTCTCCTTCCTACGGGTTAGCAGAGAACTGTACCTTTGTGTCCACTGCGTGGAGGAACTGCCACAGTGACAATATTGGTGCTTATGGTTCCAGCTTCCCAGATTTCCCAACTCACAACAAACTGTTACCGGTTGCAAGGCTCGGAAACATGGAGCAGGAAGACGTGGAGATTATGGTCGTAAACGAAGAAACCTTGGAGCCGAGTGAGGATGGCGTCGAAGGAGAAATTTGGGTTGCTTCACCAAGCAATGCTTCTGGGTACCTTGGCCACCCTAGCTTAACAAGAGAGGTGTTTCATGGAAGACTGAGAAACATGGTTAGTAAGTGCTTTCTTCGAACCGGGGACAAAGGCATCGTGAAAGGAGAAAAGAGATACCTCTTTGTTACTGGTCGCTGTCAAGATGTGATGGAACTCGAAAACGGTGAAAAGGTTCATCCACATTATATAGAGACTGCGGCGTATAATATTTGCTCCAAGTTACTCAGAGGAGGCTGCGTTGCAGCGTTTAAAGTTTCAGCAATGGTGGTGGTTGTGGCAGAGATGCAGAGGTTCGAAAAGGATGTGGATGTGGTTGTGTTGAAGTGGGTGTGTGAGAAAATTAAGGCAGGTGTCTGGAAGAAGGAGAAGGTGGAGATTGGATGGGTGGTTTTGGTTAAGAGTGAGTGTGTTCCCAAAACCACTTCTGGAAAATTGCAAAGAGGGAGGTGTAAGGAGAAGCTTCTCGCAGGGGAAATGGTGATTCTGATGGAAACGCGGTTTGAAAAAGATGTTACTGGTTTTACGAGAGCACAGAACGTAAGAGAAGAAGCTTCGGAAGAGAAGGGTCACGTGAACAGATCCCTTTCATGTATGGACACTCCTGCCTCTCTAATATCTCTTCTGTGA 1977 0.4734 MQAIMPLVLASSTTDKLKMSYEYENYDPSFPDQPVVDLYLPVWARLPAFHSKPAFIWAQDFHTTTTLTYQQLNDTVHLISSQLQGSLQRGDTVLLLCSPGLDLVELIFGCQRAGLLSVPIVPPHPSFSNQNYHHLVRAISQTKPKAAIAHSHYISSIRRYLSSPHNNTKLAHMLQTIHWISIDHVKHGKAVVTVNNRDSLTYSGCAADEVYLVQYTSGATGVPKPVLVTAGSAAHNVRTARKSYDLHPNSTIVSWLPQYHDCGLMFLLLTVVSGATCVLTSPNAFIKRPRLWLELLSEFKATCTPVPSFTLPLVIKRGGIHQSALPINLSTLKNLIIINEPIYRDSVEEFVHTFSPFGLSPSSISPSYGLAENCTFVSTAWRNCHSDNIGAYGSSFPDFPTHNKLLPVARLGNMEQEDVEIMVVNEETLEPSEDGVEGEIWVASPSNASGYLGHPSLTREVFHGRLRNMVSKCFLRTGDKGIVKGEKRYLFVTGRCQDVMELENGEKVHPHYIETAAYNICSKLLRGGCVAAFKVSAMVVVVAEMQRFEKDVDVVVLKWVCEKIKAGVWKKEKVEIGWVVLVKSECVPKTTSGKLQRGRCKEKLLAGEMVILMETRFEKDVTGFTRAQNVREEASEEKGHVNRSLSCMDTPASLISLL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5461g00012 658 CDD FAAL 48 606 IPR040097 GO:0008610
Vium5461g00012 658 SUPERFAMILY Acetyl-CoA synthetase-like 30 606 - -
Vium5461g00012 658 Pfam AMP-binding enzyme 49 502 IPR000873 -
Vium5461g00012 658 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 25 614 - -
Vium5461g00012 658 Gene3D - 27 496 IPR042099 -
Vium5461g00012 658 Gene3D - 502 619 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5461g00012 Vium-Chr5461 58968 61026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5461g00012 208 604 Monolignol Biosynthesis Gene Families AT4G19010 25.845 3.81e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5461g00012 - - vum:124840866 1335.09