Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5461g00008 | ATGGCCTCAAGCCAGGGTTGGACACCGAAGCAGAACAAAAGATTTGAGAATGCCCTTGCCATCTTCGACGAGGACACCCCAGATAGGTGGCACAACCTGGCCAGAGCCGTCGGAGGAAAAACTGTCGAAGACGTCAAAAGACATTATCAGAAGCTCGTCGAAGATGTCAAGCAGATCGAGGAAGGCCACGTGCCCCTTCCCAATTACCGAACTGTTTCAACCATGGCAAGCAGCATCAGAGGTTACGGTTACATCAACGAAGAAAACAGGATGAAGGGTCTGAGTCTGCAGTGA | 294 | 0.5102 | MASSQGWTPKQNKRFENALAIFDEDTPDRWHNLARAVGGKTVEDVKRHYQKLVEDVKQIEEGHVPLPNYRTVSTMASSIRGYGYINEENRMKGLSLQ | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5461g00008 | 97 | FunFam | Transcription factor SRM1 | 1 | 66 | - | - | |
| Vium5461g00008 | 97 | SMART | sant | 3 | 55 | IPR001005 | - | |
| Vium5461g00008 | 97 | Gene3D | - | 1 | 66 | - | - | |
| Vium5461g00008 | 97 | Pfam | Myb-like DNA-binding domain | 6 | 52 | IPR001005 | - | |
| Vium5461g00008 | 97 | SUPERFAMILY | Homeodomain-like | 5 | 61 | IPR009057 | - | |
| Vium5461g00008 | 97 | CDD | SANT | 7 | 53 | IPR001005 | - | |
| Vium5461g00008 | 97 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR-RELATED | 3 | 77 | IPR044636 | GO:0003700 | |
| Vium5461g00008 | 97 | Coils | Coil | 42 | 62 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5461g00008 | Vium-Chr5461 | 39861 | 40621 | Dispersed/Proximal |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Vium5461g00008 | Myb_DNA-binding | 5.9e-06 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium5461g00008 | - | - | vra:106761704 | 202.216 |