Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5459g00004 ATGAGTGTCAATTCAAATCATCTGCTACTTGTTGTGCTCCTGATTGCAGCGGTAGCAGCAGCTAAAACTATACCTATGTCAAAGCCAAACTGCCCATCAAAGTGTGGCAACGTTACCATTCCCTTTCCCTTTGGCCTCACAAACCCCTGTTCTCTCAACACCTCATTTCTCATCACTTGCAACCATTCCATTCCATTCCTCAATTCTAATGTTACCACTCCATTCTTCAGATCTAATGTTACCACTCCATTCTTCAATACTATTAGAAAGGTGAAGGTGCTGGACATATCACTCGACGGCCAACTTCACGTTTCATTGCCAGTTGCCACAAGTTGTGTCAATAACAAGAATGGTGAATCAGACAAGGATTACTTTTTCTTCAGGTTATACACACCTTTTCACCTGTCATCTCGGCAAAACAAGTTAACTGTATTGGGCGCTTACACGGCAGGAGTAGTATATGATGACTCTTTAAGATTCTGGACAGCATACGCTCCCACTTATTGCGTGTCCTTCTACAGCAGCATTTACGACCTCAGCATTTACAGCACACATGACGAGTCATGCTCCGGCACTTTCTGTTGCGAGACTCCAATTCAACATAGGCTATCGGACTTCTACTATTCTTGTGGTGCAAATATCTTCGACTATAACTCAACCGATGAGGCATTTCAGTCCTACCCATGTGCTTATACATTTCTGGTTAAGGAGGGAGCCTACAATTTCTCCATGACAGATTTCATCAATTTTAACACAAGCAACAGCTTTCCCGTGGTTGTGGATTGGGCAGTGGGGAACACGTGCCTAGATGCTCAGAAGAATGCTTCAAGCTATGCGTGTAAGTCAAACTACAGTGAATGTCACAATGCAACGGAGGGACCTGGTTACCATTGTAAATGCTTCACTGGTTTTCGGGGAAATCCTTACCTATCTGATGGTTGTCAAGATGTTGATGAATGTGTTGAGGAATCCCATGACTGTGTAAAGGAGAGATCAACATGCAGTAACAGCCCAGGGAGCTACAGTTGTTCTTGTCTAAAGGGATACGAAGGAGATGGAAAAAATAATGGAAGCGGATGTGTTATCAGAAGTAACCGCAAAATCATAATTGCTTTAAGTGTGACTGGAAGTATATTGGCATTTGTGGGGGGAACCTTATACGTGTACTGTGCATTAAAGAAAAGCAAACTCAACAGACTTAAAGAACATTTTTTTCAACTAAACGGTGGTCTGCTATTACAACAACAGTTAAACAGGTACAGTGGATCAAATGAATTGACAAAAATATTTAATGTGAAAGAACTAAAAGAGGCCACCAACAATTTCAATGAAGAGATGGTCTTAGGCGAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGACAATAGAATTGTAGCAATAAAAAAGTCGAGAATTAGTAATCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTTCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTTGTTCCCAATGGAACTGTCTATGAGCATCTCCACGATCAAAGCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAATTGAAACTGCTGGGGCCTTGGCGTACTTGCATTCTGCTACCCATGCACCAATCGTACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTACAAAGGTTTCTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAACTCAGTTAACCACTTTGGTGTTGGGGACACTAGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTCTATAGTTTTGGAGTTGTCCTAGCCGAACTACTAACAGGAGAGAAGGCACTCTCTTTTGAAAGGCCAGAGCCTCACAGAAACCTAGCAATTCACTTCCATTCTTCAATGAATGAGGGTCAATTACTTGACATTGTCGATGGCCGCATAATAAACGAGGCAAATGTTGAGCAACTAATGGATGTTGCAAATATTGCAAGCCATTGTTTGAGGTTGAAGGGGGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAAGGGATCAACATTGTGGAGAAGCGCCAATGGGAAAAAGTCAACTTGTCATCAGAGGAGACTGAAACTCTTCTCAAAGCAACACCATCATCTTCTTTTAGTGTTGATGGTGTTAATAGAAGAAGCATGCATTCTGGCTCTGATATTTTAAACCGATTGTCCTCCTCCTTAACTAGTGGAAGATGA 2322 0.4117 MSVNSNHLLLVVLLIAAVAAAKTIPMSKPNCPSKCGNVTIPFPFGLTNPCSLNTSFLITCNHSIPFLNSNVTTPFFRSNVTTPFFNTIRKVKVLDISLDGQLHVSLPVATSCVNNKNGESDKDYFFFRLYTPFHLSSRQNKLTVLGAYTAGVVYDDSLRFWTAYAPTYCVSFYSSIYDLSIYSTHDESCSGTFCCETPIQHRLSDFYYSCGANIFDYNSTDEAFQSYPCAYTFLVKEGAYNFSMTDFINFNTSNSFPVVVDWAVGNTCLDAQKNASSYACKSNYSECHNATEGPGYHCKCFTGFRGNPYLSDGCQDVDECVEESHDCVKERSTCSNSPGSYSCSCLKGYEGDGKNNGSGCVIRSNRKIIIALSVTGSILAFVGGTLYVYCALKKSKLNRLKEHFFQLNGGLLLQQQLNRYSGSNELTKIFNVKELKEATNNFNEEMVLGEGGEGTVYKGILPDNRIVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPNGTVYEHLHDQSKSLRLTWKRRLQIAIETAGALAYLHSATHAPIVHRDVKTSNILLDHNLTTKVSDFGASKIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLAELLTGEKALSFERPEPHRNLAIHFHSSMNEGQLLDIVDGRIINEANVEQLMDVANIASHCLRLKGEERPTMKEVAMELEGINIVEKRQWEKVNLSSEETETLLKATPSSSFSVDGVNRRSMHSGSDILNRLSSSLTSGR 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5459g00004 773 ProSitePatterns Calcium-binding EGF-like domain signature. 316 343 IPR018097 GO:0005509
Vium5459g00004 773 Gene3D Transferase(Phosphotransferase) domain 1 518 737 - -
Vium5459g00004 773 ProSiteProfiles EGF-like domain profile. 316 355 IPR000742 -
Vium5459g00004 773 CDD EGF_CA 316 352 - -
Vium5459g00004 773 CDD STKc_IRAK 448 715 - -
Vium5459g00004 773 Gene3D Laminin 266 361 - -
Vium5459g00004 773 ProSiteProfiles Protein kinase domain profile. 442 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5459g00004 773 SUPERFAMILY Protein kinase-like (PK-like) 426 726 IPR011009 -
Vium5459g00004 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Vium5459g00004 773 Gene3D Phosphorylase Kinase; domain 1 411 517 - -
Vium5459g00004 773 FunFam Wall-associated receptor kinase 2 412 517 - -
Vium5459g00004 773 FunFam Wall-associated receptor kinase 2 518 735 - -
Vium5459g00004 773 SMART egfca_6 316 361 IPR001881 GO:0005509
Vium5459g00004 773 Pfam Calcium-binding EGF domain 316 355 IPR001881 GO:0005509
Vium5459g00004 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 720 IPR045274 GO:0007166
Vium5459g00004 773 SMART serkin_6 442 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5459g00004 773 Pfam Protein kinase domain 443 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5459g00004 773 SUPERFAMILY EGF/Laminin 314 354 - -
Vium5459g00004 773 FunFam Fibrillin 2 311 356 - -
Vium5459g00004 773 Pfam Wall-associated receptor kinase galacturonan-binding 31 70 IPR025287 GO:0030247
Vium5459g00004 773 SMART egf_5 267 315 IPR000742 -
Vium5459g00004 773 SMART egf_5 319 361 IPR000742 -
Vium5459g00004 773 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 334 345 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5459g00004 Vium-Chr5459 24319 27078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5459g00004 1 723 Receptor kinase-like Gene Family AT1G21230 42.585 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium5459g00004 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5459g00004 - - vum:124835050 1236.48