Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5454g00005 ATGGAGCTGCATCACAGAAAGTTACTTGAGCCTCCATCTCCTCCTGTTTACATTATTAAACCAAATCCCAACAACCACAAAACCACATTCTTGATCGTCGGTTTTTCTGTTGTAGCCGCCGTTTTCGTTGTCCTCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTCCTAGGAACAGGTCTGTGAGGAGAAGCTTGTCTCGGCCTCAAACTGAGGAAGATTTCTTGGACGAAGAAGCACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACTGGCCTCCAACAATCAGTGATCGGTTCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGATTGATTGAAGGGTCGGAATGTTCCGTTTGTTTGAGCGAGTTTGAAGAGGACGAAAGTCTCAGGCTTTTGCCTAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCCAATGCTTTTGGTTCCAGGTCTTTTGAGGAAGTGGAGAGTGGTGGTGGAGAAGAACATAATCATGTTCAAGCTCAAGCTCAAGCTCAAGCCCAACACGGTGATGATTTGTTGAGGGGTGAGGAAGAGGGAGAAGTTGAAGAGTGTGAAACTGAGAACACGGCTTCAGAAGTGGTCGCTGTGCAACCAAGAAGATCAGTGTCTCTTGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGAGATTCTCATGGAAATAATTCAAAGAGAGTTAAAGGTGGTTGCAGTTCTTCTTCTTCTTCTTCTTCCATCAAAAGGTCACGATCCTTCAATGCCAAGCACTTAATATCATGGTATGGGCGCAGCCAGAGAAAGCCAAACGCTCCATTGAGAAGCTTCTGA 954 0.4696 MELHHRKLLEPPSPPVYIIKPNPNNHKTTFLIVGFSVVAAVFVVLCSYAIYVKFFSPRNRSVRRSLSRPQTEEDFLDEEAHGPVVDHPIWYIRTTGLQQSVIGSITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFGSRSFEEVESGGGEEHNHVQAQAQAQAQHGDDLLRGEEEGEVEECETENTASEVVAVQPRRSVSLDSSSAAKISLALATVVSGDSHGNNSKRVKGGCSSSSSSSSIKRSRSFNAKHLISWYGRSQRKPNAPLRSF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5454g00005 317 Pfam Ring finger domain 121 164 IPR001841 -
Vium5454g00005 317 SMART ring_2 122 163 IPR001841 -
Vium5454g00005 317 SUPERFAMILY RING/U-box 113 171 - -
Vium5454g00005 317 MobiDBLite consensus disorder prediction 174 211 - -
Vium5454g00005 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 171 IPR013083 -
Vium5454g00005 317 FunFam RING-H2 finger protein ATL54 97 170 - -
Vium5454g00005 317 CDD RING-H2_EL5-like 121 164 - -
Vium5454g00005 317 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vium5454g00005 317 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 172 IPR044675 -
Vium5454g00005 317 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5454g00005 Vium-Chr5454 20999 22605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5454g00005 16 230 C3H Transcription Factor Family AT1G72220 42.060 2.44e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5454g00005 - - vra:106767242 513.842