Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5451g00017 ATGTTACCAATATTCTTCAACAGTTGCAATGATCTAATTATCAAGTGGGAGGAGATGTCTTCAGACGGATCATGTGAAATAGATCTATGGCCTTTCCTTCAAAATTTAACCAGTGATATTATTGCTCGAGCTGCATTTGGAAGTAGTTATGAAGAAGGAAGAAGAATATTTGAACTTCTAAAAGAGCAAGCACAACTTGCAGCGCAAAGTATGATGAAAGATTACATCCCTGGATGGAGGAGGATGAAGGAAATTAACAGAGAAATAAAAGCTTCACTTAAAGATTTGATTAACAACAAAGAGAAAGCACTAGAGGTGGGTGAAACTACTGAGAATGACTTGTTATGTTTACTTTTGGAGTCAAATCACAAGGAAATTGAAGAACATGGAAACAGTAAGACTATTGGAATGAGTATTGAAGAGGTAATCGAGGAATGCAAGCTATTCTACTTTGCAGGGCAAGAAACCACTTCAACTTTACTTGTTTGGACCATGGTGATCTTAAGTATGCACCCTGATTGGCAAGCACGTGCAAGGGAGGAAGTTTTACAAGTATTTGGAAAACAAAAACCCGATTTTCTTGTGCTAAGTCACCTTAAGATTGTCACAATGATTTTGAATGAAGTTCTTAGGCTGTACTCACCAGTAATTGGCCTTAATAGAAATGTTGACGAAGACGTGAAACTTGGAAACCTATCATTACCTGCAGGAGTGCAAGTTTCCTTACCAACAATTATGGTTCACCATAATCCTGAACTTTGGGGTGATGATGCCGATAATTTCAATCCGGAAAGATTTTCTGAAGGAGTTCTAAAGGCCACTAATGGCAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGAGTGTGCATTGGACAAAACTTTTCCATGTTGGAGGCAAAGATGGCTTTGTCAATGATTTTACAACATTTCACATTTGAACTTTCTCCAGCTTATGCTCATGCTCCTGTTTCAGTGCTTACTCTTCAACCCCGATATGGTGCTCATGTCATTTTACGTAAACTGCAAGTATAA 1035 0.3816 MLPIFFNSCNDLIIKWEEMSSDGSCEIDLWPFLQNLTSDIIARAAFGSSYEEGRRIFELLKEQAQLAAQSMMKDYIPGWRRMKEINREIKASLKDLINNKEKALEVGETTENDLLCLLLESNHKEIEEHGNSKTIGMSIEEVIEECKLFYFAGQETTSTLLVWTMVILSMHPDWQARAREEVLQVFGKQKPDFLVLSHLKIVTMILNEVLRLYSPVIGLNRNVDEDVKLGNLSLPAGVQVSLPTIMVHHNPELWGDDADNFNPERFSEGVLKATNGRVSFFPFGWGPRVCIGQNFSMLEAKMALSMILQHFTFELSPAYAHAPVSVLTLQPRYGAHVILRKLQV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5451g00017 344 Gene3D Cytochrome P450 1 343 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 280 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 36 54 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 141 158 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 244 268 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 290 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS E-class P450 group I signature 161 187 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 Coils Coil 86 106 - -
Vium5451g00017 344 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 283 292 IPR017972 GO:0005506|GO:0016705
Vium5451g00017 344 Pfam Cytochrome P450 3 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 SUPERFAMILY Cytochrome P450 1 340 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS P450 superfamily signature 281 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS P450 superfamily signature 152 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS P450 superfamily signature 290 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PRINTS P450 superfamily signature 204 215 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5451g00017 344 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5451g00017 Vium-Chr5451 130103 132171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5451g00017 1 342 Cytochrome P450 AT3G14610 57.507 5.46e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5451g00017 - - gmx:100780780 582.408