Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5451g00012 ATGGCTTCTCTCGTAGGCGTTTCTTCCATTTACCAAACGCCTGCTCTCGAACACTACCAGAGGCCAAACTCTACTTCCACTTCCTCCGTTAGGTTGCAATGTTTGGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCCCTGGGCCCACCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACCAATTCGAACACTCCTCCGATTCTCTCCCCTCCGAACCCTCCAACCCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGCGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTATTAGTACCTGCACTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTTGGAATTCCAGTTATTAAAGGCCTCACTGAAGATGAAGATGAGCCTTCTCTCAGAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAACACTGTTTGTGTTTATGGTGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGACGTGGTGGTCGGCACCCCAGGGAGAATTATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGCGATGAAGAAGAAAAGCTCGCTGAAGGGATAAAACTTTATGCTATATCAGCTACTGCCACTTCTAAGCGGACAATTCTCTCTGACCTCGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTATTTACACAGACAAAAAAAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACGTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGATTATCCATTATGAGCTCCCCAATGATCCTGAGACTTTCGTACACCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCGCCGGCTATGGAAGAGGTCTTGGGGTCATCTGCCGAACAGGTTGTTGCCACACTTGGTGGAGTTCATCCGGAATCTATTCAGTTTTTCACCCCAACTGCACAAAAACTGATCGAAGAACAAGGAACAACTGCCCTTGCAGCTGCCCTTGCACAACTTAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGACTACGTTGCAACTAATTCGGGATTCGGAAAATAGTAGATATTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTTACTAAGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTCGCTGACAGAGAACGAGGTAACCGAAGAGGATCTACTTCTAGGGGAGGTTTTACTTCTAGGGGAGGAAATTTTGCTTCTAGGGACCGGAGAGGTTTTAAGACCTCAAGGGGATGGGATGGGGAAGACTCTGATGATGACGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGTGGCAATAGCTGGTCTCGAGCAGGAGGTAAAAGCGGTGGGGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTCAATTGTGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAAATCTTCAAACCGGCGAAGCTTTTTTTAA 2334 0.4743 MASLVGVSSIYQTPALEHYQRPNSTSTSSVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQTDHQFEHSSDSLPSEPSNPDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDEDEPSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLGSSAEQVVATLGGVHPESIQFFTPTAQKLIEEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLIRDSENSRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTISKITKLPPLQDDGPPSDFYGKFADRERGNRRGSTSRGGFTSRGGNFASRDRRGFKTSRGWDGEDSDDDDFSDRSSRRGGRNFKTGGNSWSRAGGKSGGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPKSSNRRSFF 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5451g00012 777 Pfam Helicase conserved C-terminal domain 350 457 IPR001650 -
Vium5451g00012 777 SMART ultradead3 134 340 IPR014001 -
Vium5451g00012 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 323 IPR014001 -
Vium5451g00012 777 SMART c2hcfinal6 753 769 IPR001878 GO:0003676|GO:0008270
Vium5451g00012 777 MobiDBLite consensus disorder prediction 629 752 - -
Vium5451g00012 777 SUPERFAMILY Retrovirus zinc finger-like domains 739 773 IPR036875 GO:0003676|GO:0008270
Vium5451g00012 777 ProSiteProfiles Zinc finger CCHC-type profile. 754 769 IPR001878 GO:0003676|GO:0008270
Vium5451g00012 777 MobiDBLite consensus disorder prediction 651 665 - -
Vium5451g00012 777 CDD DEADc 126 324 - -
Vium5451g00012 777 FunFam ATP-dependent RNA helicase RhlE 108 326 - -
Vium5451g00012 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 497 IPR001650 -
Vium5451g00012 777 Gene3D - 116 327 IPR027417 -
Vium5451g00012 777 MobiDBLite consensus disorder prediction 681 695 - -
Vium5451g00012 777 SMART helicmild6 377 457 IPR001650 -
Vium5451g00012 777 FunFam Nucleolar RNA helicase II 345 535 - -
Vium5451g00012 777 Gene3D - 340 530 IPR027417 -
Vium5451g00012 777 Gene3D - 726 775 - -
Vium5451g00012 777 Pfam Zinc knuckle 753 769 IPR001878 GO:0003676|GO:0008270
Vium5451g00012 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 478 IPR027417 -
Vium5451g00012 777 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 665 - -
Vium5451g00012 777 MobiDBLite consensus disorder prediction 758 777 - -
Vium5451g00012 777 Pfam GUCT (NUC152) domain 544 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vium5451g00012 777 CDD SF2_C_DEAD 337 466 - -
Vium5451g00012 777 MobiDBLite consensus disorder prediction 97 117 - -
Vium5451g00012 777 CDD GUCT_Hera 551 630 - -
Vium5451g00012 777 Pfam DEAD/DEAH box helicase 139 312 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5451g00012 Vium-Chr5451 108215 114043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5451g00012 68 479 Eukaryotic Initiation Factors Gene Family AT1G72730 35.012 3.81e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5451g00012 - - gmx:100789516 1288.09