Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5451g00011 ATGGCTTCTCTCGTAGGCGTTTCTTCCATTTACCAAACGCCTGCTCTCGAACACTACCAGAGGCCAAACTCTACTTCCACTTCCTCCGTTAGGTTGCAATGTTTGGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCCCTGGGCCCACCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACCAATTCGAACACTCCTCCGATTCTCTCCCCTCCGAACCCTCCAACCCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGCGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTATTAGTACCTGCACTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTTGGAATTCCAGTTATTAAAGGCCTCACTGAAGATGAAGATGAGCCTTCTCTCAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAACACTGTTTGTGTTTATGGTGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGACGTGGTGGTCGGCACCCCAGGGAGAATTATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGCGATGAAGAAGAAAAGCTCGCTGAAGGGATAAAACTTTATGCTATATCAGCTACTGCCACTTCTAAGCGGACAATTCTCTCTGACCTCGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTATTTACACAGACAAAAAAAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACGTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGATTATCCATTATGAGCTCCCCAATGATCCTGAGACTTTCGTACACCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCGCCGGCTATGGAAGAGGTCTTGGGGTCATCTGCCGAACAGGTTGTTGCCACACTTGGTGGAGTTCATCCGGAATCTATTCAGTTTTTCACCCCAACTGCACAAAAACTGATCGAAGAACAAGGAACAACTGCCCTTGCAGCTGCCCTTGCACAACTTAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGACTACGTTGCAACTAATTCGGGATTCGGAAAATAGTAGATATTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTTACTAAGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTCGCTGACAGAGAACGAGGTAACCGAAGAGGATCTACTTCTAGGGGAGGTTTTACTTCTAGGGGAGGAAATTTTGCTTCTAGGGACCGGAGAGGTTTTAAGACCTCAAGGGGATGGGATGGGGAAGACTCTGATGATGACGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGTGGCAATAGCTGGTCTCGAGCAGGAGGTAAAAGCGGTGGGGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTCAATTGTGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAAATCTTCAAACCGGCGAAGCTTTTTTTAA 2331 0.4745 MASLVGVSSIYQTPALEHYQRPNSTSTSSVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQTDHQFEHSSDSLPSEPSNPDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDEDEPSLRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLGSSAEQVVATLGGVHPESIQFFTPTAQKLIEEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLIRDSENSRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTISKITKLPPLQDDGPPSDFYGKFADRERGNRRGSTSRGGFTSRGGNFASRDRRGFKTSRGWDGEDSDDDDFSDRSSRRGGRNFKTGGNSWSRAGGKSGGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPKSSNRRSFF 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5451g00011 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 496 IPR001650 -
Vium5451g00011 776 SMART helicmild6 376 456 IPR001650 -
Vium5451g00011 776 Pfam DEAD/DEAH box helicase 139 311 IPR011545 GO:0003676|GO:0005524
Vium5451g00011 776 Gene3D - 725 774 - -
Vium5451g00011 776 ProSiteProfiles Zinc finger CCHC-type profile. 753 768 IPR001878 GO:0003676|GO:0008270
Vium5451g00011 776 MobiDBLite consensus disorder prediction 757 776 - -
Vium5451g00011 776 Pfam Zinc knuckle 752 768 IPR001878 GO:0003676|GO:0008270
Vium5451g00011 776 Gene3D - 116 326 IPR027417 -
Vium5451g00011 776 FunFam ATP-dependent RNA helicase RhlE 108 325 - -
Vium5451g00011 776 CDD SF2_C_DEAD 336 465 - -
Vium5451g00011 776 CDD GUCT_Hera 550 629 - -
Vium5451g00011 776 Gene3D - 339 529 IPR027417 -
Vium5451g00011 776 SUPERFAMILY Retrovirus zinc finger-like domains 738 772 IPR036875 GO:0003676|GO:0008270
Vium5451g00011 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 322 IPR014001 -
Vium5451g00011 776 CDD DEADc 126 323 - -
Vium5451g00011 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 664 - -
Vium5451g00011 776 Pfam GUCT (NUC152) domain 543 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vium5451g00011 776 MobiDBLite consensus disorder prediction 628 751 - -
Vium5451g00011 776 FunFam Nucleolar RNA helicase II 344 534 - -
Vium5451g00011 776 MobiDBLite consensus disorder prediction 97 117 - -
Vium5451g00011 776 MobiDBLite consensus disorder prediction 650 664 - -
Vium5451g00011 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vium5451g00011 776 SMART c2hcfinal6 752 768 IPR001878 GO:0003676|GO:0008270
Vium5451g00011 776 MobiDBLite consensus disorder prediction 680 694 - -
Vium5451g00011 776 SMART ultradead3 134 339 IPR014001 -
Vium5451g00011 776 Pfam Helicase conserved C-terminal domain 349 456 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5451g00011 Vium-Chr5451 108215 114043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5451g00011 68 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.096 5.49e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5451g00011 - - gmx:100789516 1281.93