Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5451g00001 ATGGGCAACGGCACTTCTCGTGTTGTTGGCTGTTTGGTGCCGTTTAATGGCAAAAGTGGTGTTGATTTGGAGTTTCTAGAGCCATTAGATGAAGGTTTAGGCCACTCTTTTTGTTACGTGAGGCCTTCTATTTTTGAATCTCCTGCCATTACCCCTTCAAACTCTGAGAGGTTCACTGTTGATTCTAGCACCCTTGATTCTGAGACATTGAGTGGTTCATTTAGGCATGAGAGCATCGAAGAGAGGCCTGGCAAGAATGTTCCGGAGACAACATTCAAGACAATATCAGGGGCTTCGGTCAGTGCCAATGTTTCCACTGCCAGGACTGGTAACCAGAATGCTCTACTTGCTAGTGATGTTCTAGAGCCTGCTGCATCCTTTGAGGGAACCTCGTCGTTTGCTGCAATCCCTTTGCAGCCTGTTCCCCGCGGTTCTGGACCTTTGAATGGATTCATGTCGGGACCCTTGGAGAGATTTGCTTCCGGTCCCTTGGATAAGGGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGAGTAATGTCAGGACCTCTTGATGCCACTGACAAGTCCAACTTCTCAGCCCCCCTTGCACGTGGTCGCCGAAGGCCACACCTCCAGCGCCTCATGAGAAGTGTGAGTGGTCCAATGAGAAACACTTTTTCTCGGACTTTTTCCAAGCACTCCATGGGTGTCAGTTGGGTGCAGCGGTTATTCCTTCATCCGGTGTCTCAACTAGCTTGGAATTCTAAAGAGGCGAAGTTTCGGTCTGAAGTTTCTAGAAACTGTACTGAAGTTGGATCGTCTGACTTGGAGTATAAACATACACAAAATTTGCAGTGGGCTCATGGTAAGGCCGGTGAAGATAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCACCTGATTTTCTGATGAGTCATCTTTATAAGTTTATAGACAAGGAATTAGAAGGGTTGCTCTGGGATTATGAAGATAATCCTGTTGATCCACTTAAACCTGATGTCCATAATAATGGAAATGATGTAGTTGCTCTAGAATCCGGTAGGGAGGAAATGTCTGATGCTCATAACATTTCAAATGAAGAAAGACCCTGCTGTACAGAAACTTCTTGTCCAGTAATGGTCAAGGATCAGCCATCTAATAGTGAGATAGTGGAGGTAAATGCCGAAATTGAGGTAAATGCTGAAATTGAGGTAAATGTTGAACAGAAAAATTGTGGAAGTCCCAGTATTGAGCATCCTGTTCCTGTATCTGTTCCAATTGGACAATTGAGTGGTCAAGGCAGAAGAAGTGTGCGACTTTATGAGCTACTTCAGATGGAATCTTGGAATGAACAAGTGTCAGAACAAGGCAAGGATTCTATAGTTCCTGCTGAAATAACACAAGAAAGGCAGTTGAGGTTCTGCTCATCTGGTGGTAAAGAGGATAGATCTGGACACCAGGATGAATGTCCTACTACTTCAGGGGAAAATGGACGCCCTGGGTTTAGTTCGACTAATCTGGAGCCTATAGCTCCCTTTTCTGTTTCAGGACAAAGACAGAATACAAGAAAGTCATTTATTGGTACAAAAATCAGAAAAATGTACAGGAAACAAAAGTCCTTACGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTTGTTTTGACAAGAAATTAGTGAAATCCTCAGGACCCATTAGAATATGCAAGTCTGGAGTAGATCATAGTGCAGTTTTAAGAGCAATGGCTCGGGCTCTTGAAAGAACAGAAGAAGAATACTTGAAAATGGTGGAGAATAGTATGGATAAAAATCCAGAGCTTGCCTTAATGGGATCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTCTATGTTATGAACCTAGGAGATAGTCGAGCCATTTTGGCTCAAGAACGACCAAATGATCGTCATCCTAATCCATGTCTCGTCAAAGATGACATGAGGCATAGGAATCGTTCTAGAGAGTCATTAGTAGGCATGGAGCTGGACAGAATTTCGGAGGAGTCCCCAGTGCACAATATTAATAAGCATGTTAACAAGATAAACAAAAATCGAGAGATATCCATGTGCAGATTGAAAATGAGGGCTGTTCAGCTTTCTACAGATCACAGCACAAGTATAGAAGAGGAAGTATTAAGAATAAGAGCAGAACACCCTGATGATAATCAGGCCATATTTAATGATCGAGTGAAAGGACAATTAAAAGTGACCAGAGCATTTGGTGCTGGATTCTTGAAGAGGCCATGTTTTAACGAACCTCTACTGAAGATGTTTCGAGTTGAATATGTGGGCAATGGTGCTTACCTAAGTTGCGCTTCGTCTGTTGTTCATCACCGGCTTTCTTCAAGTGATCGGTTCCTGGTGCTGTCCTCTGACGGCCTTTACCAATATTTCAGCAATGAAGAGGTAGTTGCCCATGTCACCTGGTTCATGGAAAATGTTCCCGAAGGCGATCCTGCACAATACCTTATAGCAGAACTTCTATTCCGTGCCGCAAAAAAGAACGGAATGGATTTTCATGAATTGCTGGATATTCCTCATGGAGATCGCCGTAAATATCATGATGATGTTTCTGTTATGGTGGTTTCCTTGGAGGGAAGGATTTGGAGATCATCCGGATAA 2682 0.4333 MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETLSGSFRHESIEERPGKNVPETTFKTISGASVSANVSTARTGNQNALLASDVLEPAASFEGTSSFAAIPLQPVPRGSGPLNGFMSGPLERFASGPLDKGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPHLQRLMRSVSGPMRNTFSRTFSKHSMGVSWVQRLFLHPVSQLAWNSKEAKFRSEVSRNCTEVGSSDLEYKHTQNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYKFIDKELEGLLWDYEDNPVDPLKPDVHNNGNDVVALESGREEMSDAHNISNEERPCCTETSCPVMVKDQPSNSEIVEVNAEIEVNAEIEVNVEQKNCGSPSIEHPVPVSVPIGQLSGQGRRSVRLYELLQMESWNEQVSEQGKDSIVPAEITQERQLRFCSSGGKEDRSGHQDECPTTSGENGRPGFSSTNLEPIAPFSVSGQRQNTRKSFIGTKIRKMYRKQKSLRKKLFPWSYDWHREETCFDKKLVKSSGPIRICKSGVDHSAVLRAMARALERTEEEYLKMVENSMDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPCLVKDDMRHRNRSRESLVGMELDRISEESPVHNINKHVNKINKNREISMCRLKMRAVQLSTDHSTSIEEEVLRIRAEHPDDNQAIFNDRVKGQLKVTRAFGAGFLKRPCFNEPLLKMFRVEYVGNGAYLSCASSVVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5451g00001 893 MobiDBLite consensus disorder prediction 483 497 - -
Vium5451g00001 893 MobiDBLite consensus disorder prediction 483 529 - -
Vium5451g00001 893 Gene3D - 527 890 IPR036457 -
Vium5451g00001 893 SMART PP2C_4 271 882 IPR001932 -
Vium5451g00001 893 PANTHER PROTEIN PHOSPHATASE 2C 273 883 IPR015655 GO:0004722|GO:0006470
Vium5451g00001 893 SUPERFAMILY PP2C-like 283 885 IPR036457 -
Vium5451g00001 893 CDD PP2Cc 586 884 IPR001932 -
Vium5451g00001 893 Pfam Protein phosphatase 2C 709 855 IPR001932 -
Vium5451g00001 893 Pfam Protein phosphatase 2C 606 653 IPR001932 -
Vium5451g00001 893 Gene3D - 245 422 IPR036457 -
Vium5451g00001 893 MobiDBLite consensus disorder prediction 498 529 - -
Vium5451g00001 893 FunFam Protein phosphatase 2C 32 248 422 - -
Vium5451g00001 893 ProSiteProfiles PPM-type phosphatase domain profile. 269 884 IPR001932 -
Vium5451g00001 893 Coils Coil 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5451g00001 Vium-Chr5451 8266 14205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5451g00001 1 893 PP2C-type Phosphatase Gene Family AT2G46920 63.466 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5451g00001 - - gmx:100786856 1659.43