Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5450g00008 ATGGAAATCATGGAAATGGAGGAATTTTTATGGGGTGGTGACATTGATGGGGATGTTCCTAAGGGGAACAGTGATGGTTTTGAAGGAAGCAGTGGAATGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCTCCTGTGAAATTGGAGAGAAAAGGGGTGTCCACTGAGAGAACCACTGAAGCTTTGAAGAACCACAGCGAGGCAGAGAGGAGAAGGAGGGCAAGGATTAATGCACATCTTGATACTCTTCGCAGTGTCATTCCCGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAGGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCTGGCCTGTTGTCTGATATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACCTTAGAAGGCAGAATGAAGAATGTTTTTGTGATCATTAGCTGCAAAGAACACAACTTTGAAGATGCTTCATACCGTCAGTTTCTGGCTGGTTCTGTTCACCAAGCTCTTAGATCTGTGCTCAATAGATTTTCTGTTTCAGAGGACATTTTAGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTGGAAGATTTCTTGTAA 786 0.416 MEIMEMEEFLWGGDIDGDVPKGNSDGFEGSSGMIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERTTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEHNFEDASYRQFLAGSVHQALRSVLNRFSVSEDILGTRKRRRISIFSSSSLEDFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5450g00008 261 SMART finulus 78 127 IPR011598 GO:0046983
Vium5450g00008 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Vium5450g00008 261 PANTHER TRANSCRIPTION FACTOR BHLH30 45 253 IPR045847 GO:0003700|GO:0006355
Vium5450g00008 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 125 IPR036638 GO:0046983
Vium5450g00008 261 CDD ACT_UUR-ACR-like 160 231 - -
Vium5450g00008 261 Gene3D - 66 129 IPR036638 GO:0046983
Vium5450g00008 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5450g00008 Vium-Chr5450 88591 90339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5450g00008 26 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.667 8.09e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5450g00008 HLH 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5450g00008 - - gmx:100788819 429.483