Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5450g00004 ATGGGTTTTCGTCTACCTGGCATCAGAAAGGCACTATATGCAGCAAATCAAGCATCTTCAAAAGCGGTGGATGCCCCAAAGGGCTATCTCGCAGTCTATGTCGGGGAGAAAATGAAGCGATTTGTGATCCCAGTATCATACTTGAACCAACCTCTATTCCAAGACTTGTTGAGTCAAGGTGAGGAAGAATTTGGATATTACCATCCAATGGGTGGTCTCACAATTCCTTGCAACGAAGATGTCTTCCAACGCATAACTTCTGGCTTGAATTCAAAATAA 279 0.4337 MGFRLPGIRKALYAANQASSKAVDAPKGYLAVYVGEKMKRFVIPVSYLNQPLFQDLLSQGEEEFGYYHPMGGLTIPCNEDVFQRITSGLNSK 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5450g00004 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 88 IPR003676 GO:0009733
Vium5450g00004 92 Pfam Auxin responsive protein 17 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5450g00004 Vium-Chr5450 32850 33189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5450g00004 17 83 Calmodulin-binding Proteins AT3G43120 49.254 1.06e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5450g00004 - K14488 gmx:100793401 167.162