Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5446g00012 ATGTTTGAAATGGCTATGTCACTGTGGAGAAGTCGCACTGCTTCATCAACACTCAACTTGTTAGCCAATACTCTTCGCGGATTCTCTTCTGAGGTGACAAACACTAGCGCTCAAAGAACGCGAGAGAGTATGATGAATCAAATGGTGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACCAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATACTGTTTGATCCAGATGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGGTGTAGGGCCACCATTGGTGTTGTGTCTAATCCAAGTCATGGAGATCGGAAGCTTAGGAAGGCTGGTCACAGCCGATGGCTTGGTCGACGACCCGTTGTTCGAGGAGTGGCAATGAATCCGGTAGATCATCCTCATGGAGGAGGAGAGGGTAAAAGCAAGAGTAGTGGAAAATGGGGGAAAGGATCTCGCACTCCTTGGGGCAAGCCAACGAAGGGTGGCTATAAGACAGGACCCTTGAAGCGCAGAAGGTAG 609 0.4828 MFEMAMSLWRSRTASSTLNLLANTLRGFSSEVTNTSAQRTRESMMNQMVYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKWGKGSRTPWGKPTKGGYKTGPLKRRR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5446g00012 202 MobiDBLite consensus disorder prediction 156 202 - -
Vium5446g00012 202 NCBIfam 50S ribosomal protein L2 51 197 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vium5446g00012 202 FunFam 50S ribosomal protein L2 128 202 - -
Vium5446g00012 202 Pfam Ribosomal Proteins L2, C-terminal domain 57 186 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium5446g00012 202 ProSitePatterns Ribosomal protein L2 signature. 150 161 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vium5446g00012 202 SMART Ribosomal_L2_C_2 55 188 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium5446g00012 202 PANTHER RIBOSOMAL PROTEIN L2 47 201 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vium5446g00012 202 Gene3D Ribosomal protein L2, domain 3 128 202 IPR014726 -
Vium5446g00012 202 SUPERFAMILY Translation proteins SH3-like domain 57 192 IPR008991 -
Vium5446g00012 202 FunFam 60S ribosomal protein L2, mitochondrial 51 127 - -
Vium5446g00012 202 Gene3D - 51 127 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5446g00012 Vium-Chr5446 158362 165400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5446g00012 54 167 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 2.52e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5446g00012 - - gmx:100792418 321.627