Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5446g00008 ATGGACGCAGAGGATCTAGCCGACGACCTTCACAGTCTCAGCTTCGCTTCCACCACCACCACTACCAAACGCAGCACAAGTTTCAGCTCAGAAACAACCACCGTCACGCCCTCCACCTCCTCCCACTTCCTTCACGCGCCAATCCCGAACGCCAAGCCTCACGCGCCCTCCTCCGACCCCTGCGCCTCTTTCATCCACCGCACGAGGCCCCTCGCCCTCTCCCACCTCCGCTTCACGCGCCGCCTCGGCTCCGGCGACATGAGCGCCGTCTATTTGGCGGAGCCCAAAGAAGAAGGTGGCGGCGCCGTGTTCGCGGCGAAGGTGATGGAGAAGGAGGACTTGGCGAGGAGGAACAAGGAAGGCAGAGCGAAGACAGAAAGGGAAATTCTCGAAATGTTGGACCACCCTTTCTTGCCCACGCTGTACGCGTCCATCCACGCGCCCAAATGGCTCTGCTTCCTAACGCCCTTCTGTCCCGGCGGTGACTTGCACGTCCTCCGCCAGCGGTTCCCCAACAAACGCTTCCTCGAATCCGCCGTCAGGTTCTATGCATCGGAAGTGTTGTTGGCACTTGAATATCTCCACATGTTGGGGATAATCTACCGCGACCTGAAGCCCGAAAACGTCTTGATAAGATCAGACGGCCACATCATGCTCACCGACTTCGATCTCTCACTAAAATGCGACGATTCCACATCAACGGCCCAGATCATCTCCGACCAAAACCCCCTTCCCACGCGCAACGATTGCCACGTGGAAGGCGCGCGCGTGGCGTCGCCCTCCTCGTGCATAATCCCGAACTGCATAGTCCCGACGGCGTCGTGTTTCCAGCCAAAACGCAAGCGAAAGAAGAAGCAGAAGCTCCGTAGCGGGCCTGCGTTCGTGGCGGAGCCCATGAACGTTCGGTCGATGTCATTCGTCGGGACCCACGAGTACTTGGCACCGGAGATCGTGTCCGGTGAGGGCCACGGTAGTCCGGTGGACTGGTGGACTTTGGGGATATTTATGTTCGAACTGTTTTACGGCGTGACACCGTTCAAGGGCATGGACCACGAGCTGACCCTGGCGAACATCGTGGCTCGAGCCCTTGAGTTCCCGAAGGAACCGGCGTGTTCAGGGGCCATGAAGGACCTTATATCGCAGCTGCTGGTTAAGGACCCCGGCAAGCGGCTAGGGTCCCTGATGGGTGCTTCTGCGATCAAGCAACACTCTTTTTTTGACGGCGTTAATTGGGCGTTGCTGAGGTGTACCACTCCACCCTTTCTTCCCTCACCTAATGCTAAAGCTGTATATGATGATGATCATCACACTTCACCTGACATTTTCGTTGATTCTTATTAA 1341 0.5735 MDAEDLADDLHSLSFASTTTTTKRSTSFSSETTTVTPSTSSHFLHAPIPNAKPHAPSSDPCASFIHRTRPLALSHLRFTRRLGSGDMSAVYLAEPKEEGGGAVFAAKVMEKEDLARRNKEGRAKTEREILEMLDHPFLPTLYASIHAPKWLCFLTPFCPGGDLHVLRQRFPNKRFLESAVRFYASEVLLALEYLHMLGIIYRDLKPENVLIRSDGHIMLTDFDLSLKCDDSTSTAQIISDQNPLPTRNDCHVEGARVASPSSCIIPNCIVPTASCFQPKRKRKKKQKLRSGPAFVAEPMNVRSMSFVGTHEYLAPEIVSGEGHGSPVDWWTLGIFMFELFYGVTPFKGMDHELTLANIVARALEFPKEPACSGAMKDLISQLLVKDPGKRLGSLMGASAIKQHSFFDGVNWALLRCTTPPFLPSPNAKAVYDDDHHTSPDIFVDSY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5446g00008 446 FunFam serine/threonine-protein kinase D6PK-like 301 424 - -
Vium5446g00008 446 PANTHER FLIPPASE KINASE 1-RELATED 22 428 - -
Vium5446g00008 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vium5446g00008 446 Pfam Protein kinase domain 303 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5446g00008 446 Pfam Protein kinase domain 79 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5446g00008 446 MobiDBLite consensus disorder prediction 21 60 - -
Vium5446g00008 446 MobiDBLite consensus disorder prediction 21 45 - -
Vium5446g00008 446 ProSitePatterns Protein kinases ATP-binding region signature. 82 107 IPR017441 GO:0005524
Vium5446g00008 446 FunFam serine/threonine-protein kinase D6PK-like 162 229 - -
Vium5446g00008 446 ProSiteProfiles AGC-kinase C-terminal domain profile. 407 446 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium5446g00008 446 Gene3D Transferase(Phosphotransferase) domain 1 162 237 - -
Vium5446g00008 446 Gene3D Transferase(Phosphotransferase) domain 1 302 424 - -
Vium5446g00008 446 SUPERFAMILY Protein kinase-like (PK-like) 55 436 IPR011009 -
Vium5446g00008 446 FunFam serine/threonine-protein kinase D6PKL2 75 161 - -
Vium5446g00008 446 ProSiteProfiles Protein kinase domain profile. 76 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5446g00008 446 SMART serkin_6 76 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5446g00008 446 Gene3D Phosphorylase Kinase; domain 1 76 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5446g00008 Vium-Chr5446 122510 125675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5446g00008 4 446 AGC Kinase Gene Family AT3G44610 63.457 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium5446g00008 Pkinase 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5446g00008 K08286 - gmx:100811470 683.33