Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5442g00014 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTGTGCCTGTGTCTGATTCACCTGTCAATTCTCTTCTGATATCCCCGCCGATACCTGGAGCTAATGATACCAAAGGAGTGATTTCAGAAAAGGAGGTAGTAAGTAGATCTTCGCATGATAACAATGTTCTTTCAACTGGAGATGAAGAGGCCAAGGTGAAGGATGTTGCTAATTTTGAAACTCAAGAGGATCCTGAGAAACATCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCGAACATTTCAAACACTCAAAGGTGCCGTACAACTACAAGCTCTCATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGCCATGCTGTCCAGAAGATTTGTAAGGATACTCATTGTTCAAATTCTATTTTGGTAGTTTCATCAACACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGCTCCTCTATCACTCACCAGTGATCCAGGAGAACCTAACTTTGGTTGGAAGTGGCTTGAATATTGGACACAGTCACACTTTTGGGCACCTCTTCCTGTATTGAAAAATAAATCTGACTCGCTGTCTGATGAGAAAAATGGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTGCTGCCGTGAAAGGTGACAATAGCTCTGTTTTAGCTAACAGATCTAAACAGCGTCCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAAGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACATGCACATAATGTTTCAAATGGATCTGAGGTTGTTAATGAAAAAAGAAAAATCAGCAGTAGAAAGATTTTGGATCACACTGTCACTGATGTTTTAGAGCAGGTCCCAAATGCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGCACAGCCAGCAAAAGATGAGAATTGTAATGAGCCACATAATGATCCTATTGCTGTTTCAAGGACTAGTGTGAAGAAGGGTGAAAATGAAAAAAATCAAGGAGTTGGTGAGGATCAGAATGGTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTTAATGATCAAGATGGTGAGGTATATGCCACTCCTGTCACTCCAAGGCTGCCCAGTTATATGGCTCCTACCGAATCTGCAAAGGCCAAGCTAAGAGGACAAAACTCCCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCATCCTCACTCAATGGAAGGTCGGGTTCATTTTCTCCGAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1653 0.4211 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFVPVSDSPVNSLLISPPIPGANDTKGVISEKEVVSRSSHDNNVLSTGDEEAKVKDVANFETQEDPEKHQLTEAAIKVQAACRSYLARRTFQTLKGAVQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGHAVQKICKDTHCSNSILVVSSTREEKVSENVFVCKLLASSPYAAPLSLTSDPGEPNFGWKWLEYWTQSHFWAPLPVLKNKSDSLSDEKNGSSQTVQRGQVKRTTRKSAAVKGDNSSVLANRSKQRPKKDSSHPLPSAQEHPQKETEKSSLEKKHAHNVSNGSEVVNEKRKISSRKILDHTVTDVLEQVPNASSEKMEDLTVAKSEESDPGKGHAQPAKDENCNEPHNDPIAVSRTSVKKGENEKNQGVGEDQNGGDDNCISNNCQRRASLPANFNDQDGEVYATPVTPRLPSYMAPTESAKAKLRGQNSPRFATDLVEKSSTTRRHSLSSSLNGRSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTEKLIQPQWRR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5442g00014 550 MobiDBLite consensus disorder prediction 528 542 - -
Vium5442g00014 550 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
Vium5442g00014 550 MobiDBLite consensus disorder prediction 294 330 - -
Vium5442g00014 550 Gene3D - 101 145 - -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 254 342 - -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 485 510 - -
Vium5442g00014 550 PANTHER IQ-DOMAIN 5-RELATED 1 507 - -
Vium5442g00014 550 SMART iq_5 101 123 IPR000048 GO:0005515
Vium5442g00014 550 SMART iq_5 124 145 IPR000048 GO:0005515
Vium5442g00014 550 SMART iq_5 149 171 IPR000048 GO:0005515
Vium5442g00014 550 Pfam IQ calmodulin-binding motif 126 143 IPR000048 GO:0005515
Vium5442g00014 550 Pfam IQ calmodulin-binding motif 103 123 IPR000048 GO:0005515
Vium5442g00014 550 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Vium5442g00014 550 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Vium5442g00014 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 168 IPR027417 -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 370 397 - -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 258 293 - -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 419 444 - -
Vium5442g00014 550 MobiDBLite consensus disorder prediction 357 550 - -
Vium5442g00014 550 Pfam Protein of unknown function (DUF4005) 449 529 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5442g00014 Vium-Chr5442 21805 27064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5442g00014 4 550 IQD Protein Family AT1G14380 36.601 3.69e-79 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5442g00014 - - gmx:100800548 823.157