Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5442g00009 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTAAACCTTCAAGTAATAAGGATGTGGTGTTGTCTTCTGAGGTGCCTGTGTCTGATTCACCTGTCAATTCTCTTCTGATATCCCCGCCGATACCTGGAGCTAATGATACCAAAGGAGTGATTTCAGAAAAGGAGGTAGTAAGTAGATCTTCGCATGATAACAATGTTCTTTCAACTGGAGATGAAGAGGCCAAGGTGAAGGATGTTGCTAATTTTGAAACTCAAGAGGATCCTGAGAAACATCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCGAACATTTCAAACACTCAAAGGTGCCGTACAACTACAAGCTCTCATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGCCATGCTGTCCAGAAGATTTGTAAGGATACTCATTGTTCAAATTCTATTTTGGTAGTTTCATCAACACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGCTCCTCTATCACTCACCAGTGATCCAGGAGAACCTAACTTTGGTTGGAAGTGGCTTGAATATTGGACACAGTCACACTTTTGGGCACCTCTTCCTGTATTGAAAAATAAATCTGACTCGCTGTCTGATGAGAAAAATGGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTGCTGCCGTGAAAGGTGACAATAGCTCTGTTTTAGCTAACAGATCTAAACAGCGTCCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAAGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACATGCACATAATGTTTCAAATGGATCTGAGGTTGTTAATGAAAAAAGAAAAATCAGCAGTAGAAAGATTTTGGATCACACTGTCACTGATGTTTTAGAGCAGGTCCCAAATGCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGCACAGCCAGCAAAAGATGAGAATTGTAATGAGCCACATAATGATCCTATTGCTGTTTCAAGGACTAGTGTGAAGAAGGGTGAAAATGAAAAAAATCAAGGAGTTGGTGAGGATCAGAATGGTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTTAATGATCAAGATGGTGAGGTATATGCCACTCCTGTCACTCCAAGGCTGCCCAGTTATATGGCTCCTACCGAATCTGCAAAGGCCAAGCTAAGAGGACAAAACTCCCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCATCCTCACTCAATGGAAGGTCGGGTTCATTTTCTCCGAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1692 0.4202 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFKPSSNKDVVLSSEVPVSDSPVNSLLISPPIPGANDTKGVISEKEVVSRSSHDNNVLSTGDEEAKVKDVANFETQEDPEKHQLTEAAIKVQAACRSYLARRTFQTLKGAVQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGHAVQKICKDTHCSNSILVVSSTREEKVSENVFVCKLLASSPYAAPLSLTSDPGEPNFGWKWLEYWTQSHFWAPLPVLKNKSDSLSDEKNGSSQTVQRGQVKRTTRKSAAVKGDNSSVLANRSKQRPKKDSSHPLPSAQEHPQKETEKSSLEKKHAHNVSNGSEVVNEKRKISSRKILDHTVTDVLEQVPNASSEKMEDLTVAKSEESDPGKGHAQPAKDENCNEPHNDPIAVSRTSVKKGENEKNQGVGEDQNGGDDNCISNNCQRRASLPANFNDQDGEVYATPVTPRLPSYMAPTESAKAKLRGQNSPRFATDLVEKSSTTRRHSLSSSLNGRSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTEKLIQPQWRR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5442g00009 563 SMART iq_5 137 158 IPR000048 GO:0005515
Vium5442g00009 563 SMART iq_5 162 184 IPR000048 GO:0005515
Vium5442g00009 563 SMART iq_5 114 136 IPR000048 GO:0005515
Vium5442g00009 563 MobiDBLite consensus disorder prediction 267 355 - -
Vium5442g00009 563 MobiDBLite consensus disorder prediction 370 563 - -
Vium5442g00009 563 MobiDBLite consensus disorder prediction 498 523 - -
Vium5442g00009 563 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vium5442g00009 563 MobiDBLite consensus disorder prediction 307 343 - -
Vium5442g00009 563 Pfam Protein of unknown function (DUF4005) 462 542 IPR025064 -
Vium5442g00009 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 181 IPR027417 -
Vium5442g00009 563 Gene3D - 112 187 - -
Vium5442g00009 563 MobiDBLite consensus disorder prediction 271 306 - -
Vium5442g00009 563 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Vium5442g00009 563 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Vium5442g00009 563 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Vium5442g00009 563 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vium5442g00009 563 MobiDBLite consensus disorder prediction 383 410 - -
Vium5442g00009 563 MobiDBLite consensus disorder prediction 541 555 - -
Vium5442g00009 563 PANTHER IQ-DOMAIN 5-RELATED 1 520 - -
Vium5442g00009 563 MobiDBLite consensus disorder prediction 432 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5442g00009 Vium-Chr5442 19165 27064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5442g00009 4 563 IQD Protein Family AT1G14380 36.467 4.59e-78 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5442g00009 - - gmx:100800548 850.506