Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5436g00003 ATGTGCCGTGGTCCAGAGAAATCAAAATCTCTATCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAGAGCCGAAGACATGAAAGATCTAACTGTTTGTCCTGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGCGATATTTCTCTAATAAACGAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTTTGGAGCACCGAACTCCTTTAATGGTTGCTGCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTGTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTTTAAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACGTCAGATGCGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCAAAGGTCTTAAAGCATCTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCACTAGCAGTTAATTCGTCATGTTCTGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTGTGGCGTCCAAGTTTACTGATACTACTGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAACTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCCACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTATAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCTTCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGGCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCAGGTGGCATTCCTCACTCATCTTCTGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACATCTGTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCCGGTGCCATTTCAGTTAATCGATCTGGTCGGTCTAAGACACTAACTCCATCAAACCTTGATGATCTATTTTCTGCTGAAATTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCCTTATCACCCATAAATACGAGTGTTTCGTCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCGAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCACTTGCGCAGCGTGACAAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGATAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAGGAATCGCCATCCGAGATTAAAGAGAAGTTGGTAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2163 0.4517 MCRGPEKSKSLSTPSSSAVEGSTRAEDMKDLTVCPEDSFSCLLELASNNDFEDFKLALDSDISLINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSLNAVDVVKLLLSSGADVRCVDANGNRPVDVIVVPPKLKGLKASLEDLLSDSGCDGSVGDCFIPLAVNSSCSDSATHFLSPENGLPSSPVASKFTDTTVNSASEKKEYPTDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSGMSPSPFAQQMSPSGGIPHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVNRSGRSKTLTPSNLDDLFSAEISSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSALAQRDKQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSINGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLVGSGGPVVSADGQNSNQVESIDHSVLGAWLEQMQLDQLVV 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5436g00003 720 PANTHER UNKEMPT FAMILY MEMBER 44 672 IPR045234 -
Vium5436g00003 720 MobiDBLite consensus disorder prediction 399 435 - -
Vium5436g00003 720 SUPERFAMILY Ankyrin repeat 30 163 IPR036770 -
Vium5436g00003 720 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Vium5436g00003 720 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Vium5436g00003 720 SMART ANK_2a 84 114 IPR002110 GO:0005515
Vium5436g00003 720 SMART ANK_2a 119 151 IPR002110 GO:0005515
Vium5436g00003 720 MobiDBLite consensus disorder prediction 1 24 - -
Vium5436g00003 720 Gene3D - 298 360 - -
Vium5436g00003 720 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Vium5436g00003 720 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Vium5436g00003 720 MobiDBLite consensus disorder prediction 8 22 - -
Vium5436g00003 720 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Vium5436g00003 720 Gene3D - 26 176 IPR036770 -
Vium5436g00003 720 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Vium5436g00003 720 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Vium5436g00003 720 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5436g00003 Vium-Chr5436 35227 39640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5436g00003 20 717 C2H2 Transcription Factor Family AT5G12850 55.234 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium5436g00003 Ank_2 2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5436g00003 - - gmx:100792574 1245.72