Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5436g00002 ATGAAAGATCTAACTGTTTGTCCTGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGCGATATTTCTCTAATAAACGAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTTTGGAGCACCGAACTCCTTTAATGGTTGCTGCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTGTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTTTAAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACGTCAGATGCGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCAAAGGTCTTAAAGCATCTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCACTAGCAGTTAATTCGTCATGTTCTGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTGTGGCGTCCAAGTTTACTGATACTACTGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAACTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCCACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTATAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCTTCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGGCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCAGGTGGCATTCCTCACTCATCTTCTGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACATCTGTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCCGGTGCCATTTCAGTTAATCGATCTGGTCGGTCTAAGACACTAACTCCATCAAACCTTGATGATCTATTTTCTGCTGAAATTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCCTTATCACCCATAAATACGAGTGTTTCGTCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCGAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCACTTGCGCAGCGTGACAAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGATAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAGGAATCGCCATCCGAGATTAAAGAGAAGTTGGTAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2082 0.452 MKDLTVCPEDSFSCLLELASNNDFEDFKLALDSDISLINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSLNAVDVVKLLLSSGADVRCVDANGNRPVDVIVVPPKLKGLKASLEDLLSDSGCDGSVGDCFIPLAVNSSCSDSATHFLSPENGLPSSPVASKFTDTTVNSASEKKEYPTDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSGMSPSPFAQQMSPSGGIPHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVNRSGRSKTLTPSNLDDLFSAEISSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSALAQRDKQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSINGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLVGSGGPVVSADGQNSNQVESIDHSVLGAWLEQMQLDQLVV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5436g00002 693 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vium5436g00002 693 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vium5436g00002 693 Gene3D - 271 333 - -
Vium5436g00002 693 Gene3D - 2 149 IPR036770 -
Vium5436g00002 693 MobiDBLite consensus disorder prediction 372 408 - -
Vium5436g00002 693 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Vium5436g00002 693 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vium5436g00002 693 PANTHER UNKEMPT FAMILY MEMBER 17 645 IPR045234 -
Vium5436g00002 693 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Vium5436g00002 693 SUPERFAMILY Ankyrin repeat 5 136 IPR036770 -
Vium5436g00002 693 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Vium5436g00002 693 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Vium5436g00002 693 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vium5436g00002 693 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vium5436g00002 693 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vium5436g00002 693 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vium5436g00002 693 Pfam Ankyrin repeats (3 copies) 42 124 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5436g00002 Vium-Chr5436 35227 39641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5436g00002 9 690 C2H2 Transcription Factor Family AT5G12850 55.915 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium5436g00002 Ank_2 1.9e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5436g00002 - - gmx:100813725 1219.53