Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5434g00002 ATGGCACAACAGCTATTACTGAACTCGTGTCCACATCAATATGTATCGCTTCGGCGGGTCAGAATTTCGAAGCCATCGATATGGGTCACGAAACCGACTATCGTTTCTTCACCATCATTTTCTACCTCAGCTCCTCTTCGCAACGCATCGTTTTGCTGCAGCTCTAGCGCTACCTCTTCTGTCGAACCCGATTTATCCTCTTCTGCCAAAATCTTCGTCAAAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGTGTAGTTAATCTCGTCCAGCTTCCTATAGATGAAAAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGTTTTTTGATGGTAGATTTATTTATGTTACTATTGCAAAGCCTGGATCATTAAAAAATTCGAAGAGCACGACAGCCTACAAATTTTAA 486 0.4156 MAQQLLLNSCPHQYVSLRRVRISKPSIWVTKPTIVSSPSFSTSAPLRNASFCCSSSATSSVEPDLSSSAKIFVKGLPHSTSEGRLMKVFSEFGVVNLVQLPIDEKSGKSLGFAFIWFVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGSLKNSKSTTAYKF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5434g00002 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Vium5434g00002 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Vium5434g00002 161 SUPERFAMILY RNA-binding domain, RBD 61 149 IPR035979 GO:0003676
Vium5434g00002 161 Gene3D - 47 158 IPR012677 -
Vium5434g00002 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vium5434g00002 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5434g00002 Vium-Chr5434 10339 13257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5434g00002 10 147 Eukaryotic Initiation Factors Gene Family AT3G11400 28.966 4.75e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5434g00002 - - gmx:100791917 179.489