Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5434g00001 ATGAACATGGTATCGGTTTCATCGGTGTGCAAGGCGGTGGCGAGTATCAACCCGGGACTGACGATGTCTCCGCTGTCGCTGTTCAGGCAGCGCAACAAGGAAAAGGTTGTGGTCATAATGGGAGCGACGGGGACAGGAAAGTCAAAGCTTGGCATAGACCTTGCCACTCACTTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGTCTCGACATCACCACCAACAAAGTCACAGAAGACGAGTGCCGAGGGGTCCCACACCATCTCCTAGGCACTGTCCAACCCAACATTGATTTCACTGCCGACGACTTTTGCCACCACGCCACCCTCGCCGTCGGCTCCATTTTGAATCGCGACGGCTTGCCCATCATTGCCGGTGGCTCTAACTCTTTCCTCGACGCCTTGGTCAACCACTACCCTGACTTTCGCTTGCGCTACCACTGTTTGTTCCTCTGGGTCGATGTCTCCCTCCCTGTCCTCCACTCCTCTCTCTCCGCACGTGTTGATCGCATGATCCGCGCCGGGCAGGTCGACGAGGTTAGACCATTTTTCCAATACCACAACCGCGACTACACCCTGGGCATTCGAAAGGCCATTGGCGTCCCCGAGTTTCATTCCTTTTTCCAGGCCGAAGCCGACGGAGCCGACGAGAGGACCAAGGAGAAGCTCCTCCAGGCTGCCATTGCCTCCATCAAAATCAACAACTGCAACCTCGCCACCCGACAGCTCCACAAGATCCACCGCCTCCACGCCGTTTTCAAACGGAACATGCACCGCCTCGACGCCACCGAAGTTTTCCTCAGGAGCACTCCCCAAGAAGCAGAGCAAGCGTGGGAGGATCACGTTCTGTCCAAAAGTCGAAGGATTCTTCACAACTTCCTCTACGACGACGCGCATGTTGATGTTGCTCTTGCTTCTGTTATCGCTTCTTCTTCGCCGCCCATGGCCGCAGCCGCCGCAACTCGCTAG 984 0.561 MNMVSVSSVCKAVASINPGLTMSPLSLFRQRNKEKVVVIMGATGTGKSKLGIDLATHFPPAEIVNSDKMQVYEGLDITTNKVTEDECRGVPHHLLGTVQPNIDFTADDFCHHATLAVGSILNRDGLPIIAGGSNSFLDALVNHYPDFRLRYHCLFLWVDVSLPVLHSSLSARVDRMIRAGQVDEVRPFFQYHNRDYTLGIRKAIGVPEFHSFFQAEADGADERTKEKLLQAAIASIKINNCNLATRQLHKIHRLHAVFKRNMHRLDATEVFLRSTPQEAEQAWEDHVLSKSRRILHNFLYDDAHVDVALASVIASSSPPMAAAAATR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5434g00001 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 190 IPR027417 -
Vium5434g00001 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
Vium5434g00001 327 Gene3D - 33 299 IPR027417 -
Vium5434g00001 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 262 - -
Vium5434g00001 327 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 262 - -
Vium5434g00001 327 Pfam IPP transferase 70 146 - -
Vium5434g00001 327 Pfam IPP transferase 150 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5434g00001 Vium-Chr5434 633 2678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5434g00001 150 299 C2H2 Transcription Factor Family AT2G27760 30.114 1.12e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5434g00001 K10760 - gmx:100782474 477.248