Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5425g00001 ATGGCTGACCTGAGAGAACTTGATACAGTGAAGATAATAGAGCAGTGTGAAGTTTCTCCGCCACCAAATTCTCTTCCTTCAACCATTCTTCCCCTAACTTTCTTTGATATTCCATGGTTCTTCTGCAACTCCATCCAACGTATCTTCTTCTATGAGTTTCCCCATCCCACGCACCACTTCCTACAAACAACACTTCCTATTCTCAAACACTCTCTTTCGCTCTCTCTCCAACACTTCTTCCCTTTTGCCTCCAATCTCATTGTTCCACCACAACTCCACCTTTCTCACATCCGTTACCTTCAAGGCGACTCTCTCTCCTTCACCGTTGCAGAGTCCACCGCAGACTTCACTCTCCTCACATCTGATTCTCCTCAAGACGTTCGAAACTGGCACCCTCTTGTTCCCACCTTGCCTTCCCCACGTGTAGAGCAGGATGGCATACGTGTGCTGCCTCTCATGGCCATTCAAGTCACGCTTTTTCCAAACTCTGGCTTCAGCATATGCCTTACCTTCAACCACCTTGCTGGGGATGGCAAATCACTTCATCATTTCGTCAAGTTTTGGGCTTCTCTTTGCAAGGCAAGAGGGGATTTGACTTCCATTGAGACCTCTTTATCTCTTCCTTCACACCAGAGAGACAAAGTTAAAGACCCAAAGGGGCTTTTGTTCATTTATTTTCGAGATCTTGAACATTTTGAGTCCAAAAGAATGGAGTTCGCAGGTCTCGTGCGAGATGTTTCCACTAACAGGGTTCGCTTCACTGTTCTACTCAGTCTTGAACAAGTTAGGAAACTAAAGAAATGGGTCTCTCTTAAATGTGCCAGTAACGATTCGGGGTTATTACACATATCAACCTTTGTCGTTGCATGCTCTTTGATTTGGGTTTGCAAGATTAGGTCGGAAGAAAAAAAAGCGAATTTTTCAGAAGAGTGTGATGAACTTTGCCACTTGGTGTTTCTAGCAGATTGCCGTGAGCGTCCTGAATTTTCATTACCTTCAACGTACTTTGGAAATTGTTTAACCTCTTACATTGTGACAATAAAGAGGAGTGAGCTAGTGTGAGAAGATGGGATCGTTGCTGCGGCGAATGCTATTGGAAAGGAAATTAGAGATTTGAAGAGTGATCCTTTGAGAAATGCTGATATGTTGATGTCAAATTATAGAGAGTTAGGGAAACCAGGTAAATCTGTGTTGGTTATTGCAGGTTCACCAAAATTGGGTGTGTACAAGACTGATTTTGGTTGGGGAAAGCCTAAGAAATGTGAAGCAGCTCATATTGAATCGTCAGGATCCATTTCTCTTTCTGATTGCAGAGACCAAAACGGAGGAATTGAGGTTGGATTGGCACTTGAAAGAACTCAGATGAATAAGTTCATCCACATCTTAGAAAAGGAAATCCATAACATTGATAGATCTGATTGA 1422 0.4304 MADLRELDTVKIIEQCEVSPPPNSLPSTILPLTFFDIPWFFCNSIQRIFFYEFPHPTHHFLQTTLPILKHSLSLSLQHFFPFASNLIVPPQLHLSHIRYLQGDSLSFTVAESTADFTLLTSDSPQDVRNWHPLVPTLPSPRVEQDGIRVLPLMAIQVTLFPNSGFSICLTFNHLAGDGKSLHHFVKFWASLCKARGDLTSIETSLSLPSHQRDKVKDPKGLLFIYFRDLEHFESKRMEFAGLVRDVSTNRVRFTVLLSLEQVRKLKKWVSLKCASNDSGLLHISTFVVACSLIWVCKIRSEEKKANFSEECDELCHLVFLADCRERPEFSLPSTYFGNCLTSYIVTIKRSELVXEDGIVAAANAIGKEIRDLKSDPLRNADMLMSNYRELGKPGKSVLVIAGSPKLGVYKTDFGWGKPKKCEAAHIESSGSISLSDCRDQNGGIEVGLALERTQMNKFIHILEKEIHNIDRSD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5425g00001 473 PANTHER - 10 467 - -
Vium5425g00001 473 Gene3D - 9 240 IPR023213 -
Vium5425g00001 473 Gene3D - 246 469 IPR023213 -
Vium5425g00001 473 Pfam Transferase family 21 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5425g00001 Vium-Chr5425 11096 12649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5425g00001 37 458 Monolignol Biosynthesis Gene Families AT5G48930 25.225 4.56e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5425g00001 - - vra:106771201 818.15